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Aliases for GC12M011581 Gene

Subcategory (RNA class) for GC12M011581 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC12M011581 Gene

No Aliases found

ORGUL Members for GC12M011581 Gene

No data available for External Ids for GC12M011581 Gene

Summaries for GC12M011581 Gene

GeneCards Summary for GC12M011581 Gene

GC12M011581 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC12M011581 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M011581 Gene

Genomics for GC12M011581 Gene

Regulatory Elements for GC12M011581 Gene

Enhancers for GC12M011581 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G009636 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.0 -12011 0.5 ATF2 CLEC12A KLRB1 CLECL1 CLEC7A CLEC2B CD69 GOT2P3 GC12M011581 RNU6-700P
GH12G009634 0.9 ENCODE dbSUPER 0.4 -10.2 -10152 0.2 CTCF ZNF654 TRIM22 ZNF143 SMC3 REST RAD21 MIXL1 CLECL1 KLRB1 GOT2P3 GC12M011581 RNU6-700P
GH12G009635 0.7 dbSUPER 0.4 -10.6 -10551 0.6 CTCF ZNF654 TAL1 TRIM22 REST RAD21 FOXA1 ARID1B GATA3 SMC3 CLECL1 KLRB1 GOT2P3 GC12M011581 RNU6-700P
GH12G009638 0.6 ENCODE 0.4 -14.5 -14512 0.2 ZNF217 CTBP1 GATA3 CEBPB ZSCAN29 CEBPG EBF1 PRDM1 KLRB1 CLECL1 GOT2P3 GC12M011581 RNU6-700P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC12M011581 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC12M011581 Gene

Chromosome:
12
Start:
9,624,121 bp from pter
End:
9,624,228 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC12M011581 Gene

Genes around GC12M011581 on UCSC Golden Path with GeneCards custom track

GC12M011581 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M011581 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M011581 Gene

Proteins for GC12M011581 Gene

Post-translational modifications for GC12M011581 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M011581 Gene

Domains & Families for GC12M011581 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M011581 Gene

Function for GC12M011581 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M011581 Gene

Localization for GC12M011581 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC12M011581 Gene

Pathways & Interactions for GC12M011581 Gene

SuperPathways for GC12M011581 Gene

No Data Available

Interacting Proteins for GC12M011581 Gene

Gene Ontology (GO) - Biological Process for GC12M011581 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M011581 Gene

Drugs & Compounds for GC12M011581 Gene

No Compound Related Data Available

Transcripts for GC12M011581 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M011581 Gene

No ASD Table

Relevant External Links for GC12M011581 Gene

GeneLoc Exon Structure for
GC12M011581

No data available for mRNA/cDNA for GC12M011581 Gene

Expression for GC12M011581 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M011581 Gene

Orthologs for GC12M011581 Gene

No data available for Orthologs and Evolution for GC12M011581 Gene

Paralogs for GC12M011581 Gene

No data available for Paralogs for GC12M011581 Gene

Variants for GC12M011581 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC12M011581 Gene

Disorders for GC12M011581 Gene

No disorders were found for GC12M011581 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M011581 Gene

Publications for GC12M011581 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC12M011581 Gene

Sources for GC12M011581 Gene

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