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Aliases for GC11P113860 Gene

Subcategory (RNA class) for GC11P113860 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC11P113860 Gene

No Aliases found

ORGUL Members for GC11P113860 Gene

No data available for External Ids for GC11P113860 Gene

Summaries for GC11P113860 Gene

GeneCards Summary for GC11P113860 Gene

GC11P113860 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC11P113860 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC11P113860 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P113860 Gene

Genomics for GC11P113860 Gene

GeneHancer (GH) Regulatory Elements for GC11P113860 Gene

Promoters and enhancers for GC11P113860 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I113858 Enhancer 0.7 Ensembl ENCODE dbSUPER 550.8 +0.7 718 2.5 PRDM6 GC11P113860 RNU6-1107P LRRC37A13P ATF4P4 GC11M113865 USP28
GH11I113847 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.7 -9706 3.8 ZNF146 USF1 REST SP1 MITF POLR2A SCRT2 POU5F1 ATF4P4 USP28 HTR3A LRRC37A13P DRD2 GC11P113860 LOC100421976
GH11I113839 Enhancer 0.7 ENCODE 0.4 -19.4 -19397 1 PKNOX1 BMI1 BATF IRF4 IKZF2 RUNX3 PAF1 RFX1 NR2F1 TRIM22 ATF4P4 GC11P113860 LOC100421976 USP28
GH11I113837 Enhancer 0.5 FANTOM5 0.3 -21.4 -21397 0.8 NFIC GATA2 ZNF740 MAFG ATF4P4 CLDN25 DRD2 LOC100421976 GC11P113860 USP28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC11P113860 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P113860 Gene

Genomic Locations for GC11P113860 Gene
chr11:113,859,345-113,859,449
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC11P113860 Gene

Genes around GC11P113860 on UCSC Golden Path with GeneCards custom track

GC11P113860 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P113860 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P113860 Gene

Proteins for GC11P113860 Gene

Post-translational modifications for GC11P113860 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P113860 Gene

Domains & Families for GC11P113860 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P113860 Gene

Function for GC11P113860 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P113860 Gene

Localization for GC11P113860 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P113860 Gene

Pathways & Interactions for GC11P113860 Gene

SuperPathways for GC11P113860 Gene

No Data Available

Interacting Proteins for GC11P113860 Gene

Gene Ontology (GO) - Biological Process for GC11P113860 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P113860 Gene

Drugs & Compounds for GC11P113860 Gene

No Compound Related Data Available

Transcripts for GC11P113860 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P113860 Gene

No ASD Table

Relevant External Links for GC11P113860 Gene

GeneLoc Exon Structure for
GC11P113860

No data available for mRNA/cDNA for GC11P113860 Gene

Expression for GC11P113860 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P113860 Gene

Orthologs for GC11P113860 Gene

No data available for Orthologs and Evolution for GC11P113860 Gene

Paralogs for GC11P113860 Gene

No data available for Paralogs for GC11P113860 Gene

Variants for GC11P113860 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P113860 Gene

Disorders for GC11P113860 Gene

No disorders were found for GC11P113860 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P113860 Gene

Publications for GC11P113860 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC11P113860 Gene

Sources for GC11P113860 Gene

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