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Aliases for GC11P017952 Gene

Subcategory (RNA class) for GC11P017952 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC11P017952 Gene

No Aliases found

ORGUL Members for GC11P017952 Gene

No data available for External Ids for GC11P017952 Gene

Summaries for GC11P017952 Gene

GeneCards Summary for GC11P017952 Gene

GC11P017952 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC11P017952 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC11P017952

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11P017952 Gene

Genomics for GC11P017952 Gene

Regulatory Elements for GC11P017952 Gene

Enhancers for GC11P017952 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G017953 0.7 ENCODE 0.7 +1.5 1511 1.3 TAF1 MAX RAD21 FOXA1 NR2F2 GABPA YY1 JUND ATF3 HNF4G SERGEF GC11P017952
GH11G017985 1.1 ENCODE dbSUPER 0.3 +33.4 33401 1.8 ELF3 SOX13 HNRNPUL1 CTCF SAP130 CEBPG ZNF644 ZNF7 TEAD3 NCOR1 SERGEF MYOD1 SAAL1 HIGD1AP5 GC11P017952
GH11G018011 1.3 ENCODE dbSUPER 0.2 +59.6 59588 3.5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF548 KLF13 SERGEF SAAL1 SNORD14B SNORD14A GTF2H1 ENSG00000256361 GC11P017952
GH11G017978 0.7 ENCODE 0.3 +25.9 25897 0.2 CTCF ESRRA ARID4B MAX RAD21 RARA YY1 ZNF121 CTBP1 GATA3 SERGEF MYOD1 KCNC1 GC11P017952
GH11G017972 0.6 ENCODE 0.3 +20.1 20133 0.6 CTCF ZNF654 JUND SMC3 FOS REST RAD21 TCF7L2 SERGEF MYOD1 GC11P017952
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC11P017952 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC11P017952 Gene

Chromosome:
11
Start:
17,952,952 bp from pter
End:
17,953,066 bp from pter
Size:
115 bases
Orientation:
Plus strand

Genomic View for GC11P017952 Gene

Genes around GC11P017952 on UCSC Golden Path with GeneCards custom track

GC11P017952 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P017952 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC11P017952 Gene

ORGUL Member Location for GC11P017952 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P017952 Gene

Proteins for GC11P017952 Gene

Post-translational modifications for GC11P017952 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P017952 Gene

Domains & Families for GC11P017952 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P017952 Gene

Function for GC11P017952 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P017952 Gene

Localization for GC11P017952 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC11P017952 Gene

Pathways & Interactions for GC11P017952 Gene

SuperPathways for GC11P017952 Gene

No Data Available

Interacting Proteins for GC11P017952 Gene

Gene Ontology (GO) - Biological Process for GC11P017952 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P017952 Gene

Drugs & Compounds for GC11P017952 Gene

No Compound Related Data Available

Transcripts for GC11P017952 Gene

fRNAdb Secondary structures for GC11P017952 Gene

  • FR359356
  • FR130580

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P017952 Gene

No ASD Table

Relevant External Links for GC11P017952 Gene

GeneLoc Exon Structure for
GC11P017952

No data available for mRNA/cDNA for GC11P017952 Gene

Expression for GC11P017952 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P017952 Gene

Orthologs for GC11P017952 Gene

No data available for Orthologs and Evolution for GC11P017952 Gene

Paralogs for GC11P017952 Gene

No data available for Paralogs for GC11P017952 Gene

Variants for GC11P017952 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC11P017952 Gene

Disorders for GC11P017952 Gene

No disorders were found for GC11P017952 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P017952 Gene

Publications for GC11P017952 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC11P017952 Gene

Sources for GC11P017952 Gene

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