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Aliases for GC11M002224 Gene

Subcategory (RNA class) for GC11M002224 Gene

rRNA

Quality Score for this RNA gene is

12

Aliases for GC11M002224 Gene

No Aliases found

ORGUL Members for GC11M002224 Gene

No data available for External Ids for GC11M002224 Gene

Summaries for GC11M002224 Gene

GeneCards Summary for GC11M002224 Gene

GC11M002224 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC11M002224 Gene

  • rRNA_5_8S: 5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea.

Additional gene information for GC11M002224 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC11M002224 Gene

Genomics for GC11M002224 Gene

Regulatory Elements for GC11M002224 Gene

Enhancers for GC11M002224 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H002212 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.3 11319 2 ELF3 TBP FOXA2 MLX RAD21 DNMT3B THRB RARA CREM MIXL1 TSPAN32 ASCL2 TH GC11M002206 GC11M002224
GH11H002265 1.2 FANTOM5 Ensembl ENCODE 0.3 -40.9 -40881 1 STAT1 IKZF1 JUNB IKZF2 BATF MAFK SPI1 C11orf21 LSP1 ASCL2 GC11M002224
GH11H002267 1.2 ENCODE dbSUPER 0.3 -44.1 -44093 3 ARID4B DMAP1 TCF12 SP5 MXD4 GLIS1 MXD3 ETV4 SETDB1 CTCF PHLDA2 C11orf21 H19 ASCL2 GC11M002224
GH11H002216 0.7 FANTOM5 dbSUPER 0.4 +8.2 8220 0 KLF1 ZSCAN4 CDC5L TSPAN32 GC11M002206 GC11M002224
GH11H002257 0.9 ENCODE dbSUPER 0.3 -32.4 -32442 0 SMARCE1 ZNF687 DPF2 ZBTB7B ZNF592 ZNF217 E2F1 JUND GATA3 MTA1 ASCL2 GC11M002224
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC11M002224 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC11M002224 Gene

Chromosome:
11
Start:
2,224,881 bp from pter
End:
2,225,016 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC11M002224 Gene

Genes around GC11M002224 on UCSC Golden Path with GeneCards custom track

GC11M002224 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11M002224 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11M002224 Gene

Proteins for GC11M002224 Gene

Post-translational modifications for GC11M002224 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11M002224 Gene

Domains & Families for GC11M002224 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11M002224 Gene

Function for GC11M002224 Gene

Animal Model Products

miRNA for GC11M002224 Gene

miRTarBase miRNAs that target GC11M002224

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC11M002224 Gene

Localization for GC11M002224 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11M002224 Gene

Pathways & Interactions for GC11M002224 Gene

SuperPathways for GC11M002224 Gene

No Data Available

Interacting Proteins for GC11M002224 Gene

Gene Ontology (GO) - Biological Process for GC11M002224 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11M002224 Gene

Drugs & Compounds for GC11M002224 Gene

No Compound Related Data Available

Transcripts for GC11M002224 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11M002224 Gene

No ASD Table

Relevant External Links for GC11M002224 Gene

GeneLoc Exon Structure for
GC11M002224

No data available for mRNA/cDNA for GC11M002224 Gene

Expression for GC11M002224 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11M002224 Gene

Orthologs for GC11M002224 Gene

No data available for Orthologs and Evolution for GC11M002224 Gene

Paralogs for GC11M002224 Gene

No data available for Paralogs for GC11M002224 Gene

Variants for GC11M002224 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC11M002224 Gene

Disorders for GC11M002224 Gene

No disorders were found for GC11M002224 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11M002224 Gene

Publications for GC11M002224 Gene

  1. The European Large Subunit Ribosomal RNA Database. (PMID: 11125083) Wuyts J … De Wachter R (Nucleic acids research 2001) 1
  2. Cytoplasmic p53 polypeptide is associated with ribosomes. (PMID: 9154813) Fontoura BM … Carroll RB (Molecular and cellular biology 1997) 1
  3. Role of the 5.8S rRNA in ribosome translocation. (PMID: 9108162) Abou Elela S … Nazar RN (Nucleic acids research 1997) 1

Products for GC11M002224 Gene

Sources for GC11M002224 Gene

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