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Aliases for GC10P049396 Gene

Subcategory (RNA class) for GC10P049396 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC10P049396 Gene

No Aliases found

ORGUL Members for GC10P049396 Gene

No data available for External Ids for GC10P049396 Gene

Summaries for GC10P049396 Gene

GeneCards Summary for GC10P049396 Gene

GC10P049396 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC10P049396 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC10P049396

Additional gene information for GC10P049396 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10P049396 Gene

Genomics for GC10P049396 Gene

Regulatory Elements for GC10P049396 Gene

Enhancers for GC10P049396 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H049395 1.8 VISTA FANTOM5 0.7 +0.4 368 1 POLR2A SUZ12 RCOR1 EZH2 DRGX GC10P049396 ENSG00000235939
GH10H049398 0.8 ENCODE 0.7 +2.0 1984 0 RING1 SUZ12 ETV1 SIN3A ZNF766 GLIS2 EGR1 PATZ1 ZNF143 ZNF600 AGAP6 GC10P049396 ENSG00000235939
GH10H049397 0.5 ENCODE 0.7 +1.3 1334 0 POLR2A SUZ12 EZH2 GC10P049396 ENSG00000235939
GH10H049407 0.7 ENCODE 0.4 +11.6 11614 0 CTCF ZNF654 PKNOX1 RB1 BHLHE40 TRIM22 REST ZNF2 RAD21 GATA3 PGBD3 C10orf71-AS1 ENSG00000235939 GC10P049396
GH10H049408 0.6 ENCODE 0.4 +12.5 12504 0 CTCF NFIL3 ATF1 RFX1 HLF MAX CREM PGBD3 DRGX ENSG00000235939 GC10P049396
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10P049396 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10P049396 Gene

Chromosome:
10
Start:
49,396,116 bp from pter
End:
49,396,220 bp from pter
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC10P049396 Gene

Genes around GC10P049396 on UCSC Golden Path with GeneCards custom track

GC10P049396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10P049396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC10P049396 Gene

ORGUL Member Location for GC10P049396 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC10P049396 Gene

Proteins for GC10P049396 Gene

Post-translational modifications for GC10P049396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10P049396 Gene

Domains & Families for GC10P049396 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10P049396 Gene

Function for GC10P049396 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10P049396 Gene

Localization for GC10P049396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10P049396 Gene

Pathways & Interactions for GC10P049396 Gene

SuperPathways for GC10P049396 Gene

No Data Available

Interacting Proteins for GC10P049396 Gene

Gene Ontology (GO) - Biological Process for GC10P049396 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10P049396 Gene

Drugs & Compounds for GC10P049396 Gene

No Compound Related Data Available

Transcripts for GC10P049396 Gene

fRNAdb Secondary structures for GC10P049396 Gene

  • FR118863
  • FR164908

Alternative Splicing Database (ASD) splice patterns (SP) for GC10P049396 Gene

No ASD Table

Relevant External Links for GC10P049396 Gene

GeneLoc Exon Structure for
GC10P049396

No data available for mRNA/cDNA for GC10P049396 Gene

Expression for GC10P049396 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10P049396 Gene

Orthologs for GC10P049396 Gene

No data available for Orthologs and Evolution for GC10P049396 Gene

Paralogs for GC10P049396 Gene

No data available for Paralogs for GC10P049396 Gene

Variants for GC10P049396 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10P049396 Gene

Disorders for GC10P049396 Gene

No disorders were found for GC10P049396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10P049396 Gene

Publications for GC10P049396 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC10P049396 Gene

Sources for GC10P049396 Gene

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