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Aliases for GC10P022788 Gene

Subcategory (RNA class) for GC10P022788 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10P022788 Gene

No Aliases found

ORGUL Members for GC10P022788 Gene

No data available for External Ids for GC10P022788 Gene

Summaries for GC10P022788 Gene

GeneCards Summary for GC10P022788 Gene

GC10P022788 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10P022788 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10P022788 Gene

Genomics for GC10P022788 Gene

Regulatory Elements for GC10P022788 Gene

Enhancers for GC10P022788 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G022815 1.3 Ensembl ENCODE 0.3 +29.6 29559 2.6 PKNOX1 CREB3L1 ARNT SIN3A FEZF1 ZNF766 FOS JUNB ZNF592 MEF2D RNU6-413P GC10P022788 LOC105376451
GH10G022805 0.7 ENCODE 0.4 +18.2 18225 0.8 CTCF PKNOX1 FOXA2 NFIA NFIB FOXA3 BHLHE40 MNT RAD21 TEAD3 PIP4K2A GC10P022788 LOC105376451
GH10G022849 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +62.2 62213 1.1 SOX5 DRAP1 SAP130 MAX ZNF48 RAD21 NR2F2 YY1 ARMC3 PIP4K2A LOC105376451 GC10P022788
GH10G022821 0.9 ENCODE 0.3 +34.3 34275 0.7 ELF3 ZNF493 ZFP64 ZNF121 ZNF138 ZNF354C ZNF202 ZNF654 ZNF680 ZNF426 ENSG00000261671 RNU6-413P GC10P022788 LOC105376451
GH10G022822 0.8 ENCODE 0.3 +37.1 37071 4.1 ZBTB40 BRCA1 GATA2 FOS JUNB USF2 ZEB2 RAD51 CEBPA IKZF1 RNU6-413P LOC105376451 GC10P022788
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10P022788 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10P022788 Gene

Chromosome:
10
Start:
22,787,396 bp from pter
End:
22,787,499 bp from pter
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC10P022788 Gene

Genes around GC10P022788 on UCSC Golden Path with GeneCards custom track

GC10P022788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10P022788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10P022788 Gene

Proteins for GC10P022788 Gene

Post-translational modifications for GC10P022788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10P022788 Gene

Domains & Families for GC10P022788 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10P022788 Gene

Function for GC10P022788 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10P022788 Gene

Localization for GC10P022788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC10P022788 Gene

Pathways & Interactions for GC10P022788 Gene

SuperPathways for GC10P022788 Gene

No Data Available

Interacting Proteins for GC10P022788 Gene

Gene Ontology (GO) - Biological Process for GC10P022788 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10P022788 Gene

Drugs & Compounds for GC10P022788 Gene

No Compound Related Data Available

Transcripts for GC10P022788 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10P022788 Gene

No ASD Table

Relevant External Links for GC10P022788 Gene

GeneLoc Exon Structure for
GC10P022788

No data available for mRNA/cDNA for GC10P022788 Gene

Expression for GC10P022788 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10P022788 Gene

Orthologs for GC10P022788 Gene

No data available for Orthologs and Evolution for GC10P022788 Gene

Paralogs for GC10P022788 Gene

No data available for Paralogs for GC10P022788 Gene

Variants for GC10P022788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10P022788 Gene

Disorders for GC10P022788 Gene

No disorders were found for GC10P022788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10P022788 Gene

Publications for GC10P022788 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC10P022788 Gene

Sources for GC10P022788 Gene

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