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Aliases for GC10P013727 Gene

Subcategory (RNA class) for GC10P013727 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC10P013727 Gene

No Aliases found

ORGUL Members for GC10P013727 Gene

No data available for External Ids for GC10P013727 Gene

Summaries for GC10P013727 Gene

GeneCards Summary for GC10P013727 Gene

GC10P013727 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC10P013727 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC10P013727 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10P013727 Gene

Genomics for GC10P013727 Gene

Regulatory Elements for GC10P013727 Gene

Enhancers for GC10P013727 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H013711 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.4 -12414 8 FOXA2 SIN3A BMI1 BATF RAD21 TCF12 ZNF121 EGR1 SCRT2 ZNF207 ENSG00000225112 GC10P013727
GH10H013724 0.6 ENCODE 0.7 -4.4 -4360 0 IRF9 CEBPA HMBOX1 CEBPB CEBPG ZNF24 GC10P013727 ENSG00000225112
GH10H013723 0.5 ENCODE 0.7 -3.3 -3309 1 MAX CEBPG NR2F2 GC10P013727 ENSG00000225112
GH10H013710 0.4 ENCODE 0.4 -16.8 -16831 0 ZNF121 ENSG00000225112 GC10P013727
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10P013727 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10P013727 Gene

Chromosome:
10
Start:
13,727,795 bp from pter
End:
13,727,916 bp from pter
Size:
122 bases
Orientation:
Plus strand

Genomic View for GC10P013727 Gene

Genes around GC10P013727 on UCSC Golden Path with GeneCards custom track

GC10P013727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10P013727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10P013727 Gene

Proteins for GC10P013727 Gene

Post-translational modifications for GC10P013727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10P013727 Gene

Domains & Families for GC10P013727 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10P013727 Gene

Function for GC10P013727 Gene

Phenotypes From GWAS Catalog for GC10P013727 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10P013727 Gene

Localization for GC10P013727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10P013727 Gene

Pathways & Interactions for GC10P013727 Gene

SuperPathways for GC10P013727 Gene

No Data Available

Interacting Proteins for GC10P013727 Gene

Gene Ontology (GO) - Biological Process for GC10P013727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10P013727 Gene

Drugs & Compounds for GC10P013727 Gene

No Compound Related Data Available

Transcripts for GC10P013727 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10P013727 Gene

No ASD Table

Relevant External Links for GC10P013727 Gene

GeneLoc Exon Structure for
GC10P013727

No data available for mRNA/cDNA for GC10P013727 Gene

Expression for GC10P013727 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10P013727 Gene

Orthologs for GC10P013727 Gene

No data available for Orthologs and Evolution for GC10P013727 Gene

Paralogs for GC10P013727 Gene

No data available for Paralogs for GC10P013727 Gene

Variants for GC10P013727 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10P013727 Gene

Disorders for GC10P013727 Gene

No disorders were found for GC10P013727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10P013727 Gene

Publications for GC10P013727 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC10P013727 Gene

Sources for GC10P013727 Gene

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