Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC10P004514 Gene

Subcategory (RNA class) for GC10P004514 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10P004514 Gene

No Aliases found

ORGUL Members for GC10P004514 Gene

No data available for External Ids for GC10P004514 Gene

Summaries for GC10P004514 Gene

GeneCards Summary for GC10P004514 Gene

GC10P004514 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10P004514 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC10P004514 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10P004514 Gene

Genomics for GC10P004514 Gene

GeneHancer (GH) Regulatory Elements for GC10P004514 Gene

Promoters and enhancers for GC10P004514 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I004513 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.5 -476 1.5 SUZ12 MAX DPF2 IRF4 BCL11A IKZF1 ETV6 IKZF2 SPI1 GC10P004514 RNU6-163P ENSG00000230096
GH10I004510 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 -2.9 -2915 3.2 ZNF202 CTCF ZNF654 ZNF362 RFX1 SMC3 RAD21 GC10P004514 ENSG00000230096
GH10I004497 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.3 -16316 2.7 JUND POLR2A CREB1 GC10P004514 ENSG00000230096
GH10I004459 Enhancer 0.8 ENCODE 0.2 -55.2 -55217 0.1 ELF3 SOX13 FOXA2 ZNF792 SAP130 ZNF644 RAD21 ZSCAN9 RARA TEAD3 RNU6-163P ENSG00000230096 GC10P004514
GH10I004469 Enhancer 0.5 ENCODE 0.3 -44.6 -44614 0.8 JUND POLR2A CEBPB FOS CEBPG RNU6-163P ENSG00000230096 GC10P004514
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC10P004514 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC10P004514 Gene

Genomic Locations for GC10P004514 Gene
chr10:4,514,951-4,515,057
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC10P004514 Gene

Genes around GC10P004514 on UCSC Golden Path with GeneCards custom track

GC10P004514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10P004514 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10P004514 Gene

Proteins for GC10P004514 Gene

Post-translational modifications for GC10P004514 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10P004514 Gene

Domains & Families for GC10P004514 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10P004514 Gene

Function for GC10P004514 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10P004514 Gene

Localization for GC10P004514 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10P004514 Gene

Pathways & Interactions for GC10P004514 Gene

SuperPathways for GC10P004514 Gene

No Data Available

Interacting Proteins for GC10P004514 Gene

Gene Ontology (GO) - Biological Process for GC10P004514 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10P004514 Gene

Drugs & Compounds for GC10P004514 Gene

No Compound Related Data Available

Transcripts for GC10P004514 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10P004514 Gene

No ASD Table

Relevant External Links for GC10P004514 Gene

GeneLoc Exon Structure for
GC10P004514

No data available for mRNA/cDNA for GC10P004514 Gene

Expression for GC10P004514 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10P004514 Gene

Orthologs for GC10P004514 Gene

No data available for Orthologs and Evolution for GC10P004514 Gene

Paralogs for GC10P004514 Gene

No data available for Paralogs for GC10P004514 Gene

Variants for GC10P004514 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC10P004514 Gene

Disorders for GC10P004514 Gene

No disorders were found for GC10P004514 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10P004514 Gene

Publications for GC10P004514 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC10P004514 Gene

Sources for GC10P004514 Gene

Content
Loading form....