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Aliases for GC10M125891 Gene

Subcategory (RNA class) for GC10M125891 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10M125891 Gene

No Aliases found

ORGUL Members for GC10M125891 Gene

No data available for External Ids for GC10M125891 Gene

Summaries for GC10M125891 Gene

GeneCards Summary for GC10M125891 Gene

GC10M125891 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10M125891 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M125891 Gene

Genomics for GC10M125891 Gene

Regulatory Elements for GC10M125891 Gene

Enhancers for GC10M125891 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G125887 1.3 FANTOM5 ENCODE dbSUPER 0.7 +2.0 1988 2.3 HDAC1 ATF1 NFRKB NFXL1 RAD21 GTF3C2 ZNF350 ZNF263 ZNF654 ZNF491 EDRF1-AS1 MMP21 UROS GC10M125891 RNU2-42P GC10P125882 GC10P125883
GH10G125892 1 ENCODE dbSUPER 0.7 -2.0 -1987 1.0 ZSCAN26 NFRKB BRCA1 ZNF507 GTF3C2 FOXM1 CBX5 FOXK2 TCF7L2 STAT1 EDRF1-AS1 ENSG00000234134 FANK1 GC10M125891 RNU2-42P
GH10G125885 1 ENCODE dbSUPER 0.7 +4.0 3972 1.6 ARNT GLI4 PYGO2 BRCA1 ZNF507 ZNF7 FOXK2 FOS BCLAF1 EZH2 GC10M125891 GC10P125883 GC10P125882 RNU2-42P
GH10G125895 1.6 FANTOM5 ENCODE dbSUPER 0.4 -5.5 -5539 2.8 ARID4B SIN3A DMAP1 YY1 ZNF263 SP3 SP5 MXD4 REST ZNF662 MMP21 FANK1 GC10M125891 RNU2-42P
GH10G125894 0.8 ENCODE dbSUPER 0.7 -3.9 -3869 0.2 STAT1 FOXK2 SUZ12 NFE2L1 CUX1 FOXA1 GC10M125891 RNU2-42P FANK1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10M125891 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10M125891 Gene

Chromosome:
10
Start:
125,890,523 bp from pter
End:
125,890,678 bp from pter
Size:
156 bases
Orientation:
Minus strand

Genomic View for GC10M125891 Gene

Genes around GC10M125891 on UCSC Golden Path with GeneCards custom track

GC10M125891 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M125891 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M125891 Gene

Proteins for GC10M125891 Gene

Post-translational modifications for GC10M125891 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M125891 Gene

Domains & Families for GC10M125891 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M125891 Gene

Function for GC10M125891 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M125891 Gene

Localization for GC10M125891 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC10M125891 Gene

Pathways & Interactions for GC10M125891 Gene

SuperPathways for GC10M125891 Gene

No Data Available

Interacting Proteins for GC10M125891 Gene

Gene Ontology (GO) - Biological Process for GC10M125891 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M125891 Gene

Drugs & Compounds for GC10M125891 Gene

No Compound Related Data Available

Transcripts for GC10M125891 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M125891 Gene

No ASD Table

Relevant External Links for GC10M125891 Gene

GeneLoc Exon Structure for
GC10M125891

No data available for mRNA/cDNA for GC10M125891 Gene

Expression for GC10M125891 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M125891 Gene

Orthologs for GC10M125891 Gene

No data available for Orthologs and Evolution for GC10M125891 Gene

Paralogs for GC10M125891 Gene

No data available for Paralogs for GC10M125891 Gene

Variants for GC10M125891 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10M125891 Gene

Disorders for GC10M125891 Gene

No disorders were found for GC10M125891 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M125891 Gene

Publications for GC10M125891 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund J.A. … Schultz S.C. (RNA 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby M.I. … Greenbaum N.L. (RNA 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC10M125891 Gene

Sources for GC10M125891 Gene

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