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Aliases for GC10M068220 Gene

Subcategory (RNA class) for GC10M068220 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10M068220 Gene

No Aliases found

ORGUL Members for GC10M068220 Gene

No data available for External Ids for GC10M068220 Gene

Summaries for GC10M068220 Gene

GeneCards Summary for GC10M068220 Gene

GC10M068220 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10M068220 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC10M068220 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M068220 Gene

Genomics for GC10M068220 Gene

Regulatory Elements for GC10M068220 Gene

Enhancers for GC10M068220 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H068230 1 ENCODE 0.4 -10.9 -10908 1 ARNT SIN3A ZNF2 ZNF121 GLIS2 ATF7 REST SMARCB1 ZNF592 SMARCA4 PBLD ATOH7 GC10M068220
GH10H068208 0.8 ENCODE 0.4 +11.9 11852 0 ELF3 CTCF MAX ZNF2 RAD21 RFX5 TEAD3 PATZ1 SMC3 ZNF143 ATOH7 ENSG00000233590 HNRNPH3 PBLD GC10M068220 RN7SKP202
GH10H068202 0.7 Ensembl ENCODE 0.4 +17.5 17519 0 ZNF121 GABPA ENSG00000233590 ATOH7 HNRNPH3 PBLD MYPN GC10M068220 RN7SKP202
GH10H068173 0.8 ENCODE 0.2 +47.0 46982 0 HDGF SOX13 TFAP4 CEBPG CREM GATAD2A SOX5 FOXA3 HLF ZC3H11A MYPN DNA2 RN7SKP202 GC10M068220
GH10H068163 0.8 ENCODE 0.2 +56.5 56475 0 FOXA2 BACH1 MAX CEBPG BATF RAD21 ATF7 RUNX3 IKZF2 MIXL1 MYPN ATOH7 ENSG00000233590 HERC4 RN7SKP202 GC10M068220
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10M068220 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10M068220 Gene

Chromosome:
10
Start:
68,220,342 bp from pter
End:
68,220,519 bp from pter
Size:
178 bases
Orientation:
Minus strand

Genomic View for GC10M068220 Gene

Genes around GC10M068220 on UCSC Golden Path with GeneCards custom track

GC10M068220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M068220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M068220 Gene

Proteins for GC10M068220 Gene

Post-translational modifications for GC10M068220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M068220 Gene

Domains & Families for GC10M068220 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M068220 Gene

Function for GC10M068220 Gene

Phenotypes From GWAS Catalog for GC10M068220 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M068220 Gene

Localization for GC10M068220 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC10M068220 Gene

Pathways & Interactions for GC10M068220 Gene

SuperPathways for GC10M068220 Gene

No Data Available

Interacting Proteins for GC10M068220 Gene

Gene Ontology (GO) - Biological Process for GC10M068220 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M068220 Gene

Drugs & Compounds for GC10M068220 Gene

No Compound Related Data Available

Transcripts for GC10M068220 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M068220 Gene

No ASD Table

Relevant External Links for GC10M068220 Gene

GeneLoc Exon Structure for
GC10M068220

No data available for mRNA/cDNA for GC10M068220 Gene

Expression for GC10M068220 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M068220 Gene

Orthologs for GC10M068220 Gene

No data available for Orthologs and Evolution for GC10M068220 Gene

Paralogs for GC10M068220 Gene

No data available for Paralogs for GC10M068220 Gene

Variants for GC10M068220 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10M068220 Gene

Disorders for GC10M068220 Gene

No disorders were found for GC10M068220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M068220 Gene

Publications for GC10M068220 Gene

  1. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  2. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC10M068220 Gene

Sources for GC10M068220 Gene

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