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Aliases for GC10M008656 Gene

Subcategory (RNA class) for GC10M008656 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC10M008656 Gene

No Aliases found

ORGUL Members for GC10M008656 Gene

No data available for External Ids for GC10M008656 Gene

Summaries for GC10M008656 Gene

GeneCards Summary for GC10M008656 Gene

GC10M008656 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC10M008656 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M008656 Gene

Genomics for GC10M008656 Gene

Regulatory Elements for GC10M008656 Gene

Enhancers for GC10M008656 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G008628 0.8 ENCODE 0.3 +28.3 28289 0.2 PKNOX1 JUN SIN3A BMI1 ZBTB40 RAD21 MTA3 GATA3 CTBP1 FOSL2 CHCHD3P1 GC10M008656 RNA5SP299
GH10G008702 1 ENCODE 0.2 -46.0 -45994 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 ZNF302 FOS KLF7 ZNF548 TSHZ1 KIN GC10P008711 GC10M008656 RNA5SP299
GH10G008640 0.4 ENCODE 0.4 +16.0 15987 0.1 JUND GC10M008656 RNA5SP299 CHCHD3P1
GH10G008639 0.4 ENCODE 0.4 +17.2 17219 0.2 SUZ12 ZNF366 CHCHD3P1 GC10M008656 RNA5SP299
GH10G008641 0.4 ENCODE 0.4 +16.7 16710 0.7 ZNF366 SUZ12 GATA3 GC10M008656 RNA5SP299 CHCHD3P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10M008656 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10M008656 Gene

Chromosome:
10
Start:
8,656,715 bp from pter
End:
8,656,831 bp from pter
Size:
117 bases
Orientation:
Minus strand

Genomic View for GC10M008656 Gene

Genes around GC10M008656 on UCSC Golden Path with GeneCards custom track

GC10M008656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M008656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M008656 Gene

Proteins for GC10M008656 Gene

Post-translational modifications for GC10M008656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M008656 Gene

Domains & Families for GC10M008656 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M008656 Gene

Function for GC10M008656 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M008656 Gene

Localization for GC10M008656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC10M008656 Gene

Pathways & Interactions for GC10M008656 Gene

SuperPathways for GC10M008656 Gene

No Data Available

Interacting Proteins for GC10M008656 Gene

Gene Ontology (GO) - Biological Process for GC10M008656 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M008656 Gene

Drugs & Compounds for GC10M008656 Gene

No Compound Related Data Available

Transcripts for GC10M008656 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M008656 Gene

No ASD Table

Relevant External Links for GC10M008656 Gene

GeneLoc Exon Structure for
GC10M008656

No data available for mRNA/cDNA for GC10M008656 Gene

Expression for GC10M008656 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M008656 Gene

Orthologs for GC10M008656 Gene

No data available for Orthologs and Evolution for GC10M008656 Gene

Paralogs for GC10M008656 Gene

No data available for Paralogs for GC10M008656 Gene

Variants for GC10M008656 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10M008656 Gene

Disorders for GC10M008656 Gene

No disorders were found for GC10M008656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M008656 Gene

Publications for GC10M008656 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC10M008656 Gene

Sources for GC10M008656 Gene

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