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Aliases for GC10M007486 Gene

Subcategory (RNA class) for GC10M007486 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC10M007486 Gene

No Aliases found

ORGUL Members for GC10M007486 Gene

No data available for External Ids for GC10M007486 Gene

Summaries for GC10M007486 Gene

GeneCards Summary for GC10M007486 Gene

GC10M007486 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC10M007486 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC10M007486 Gene

Genomics for GC10M007486 Gene

Regulatory Elements for GC10M007486 Gene

Enhancers for GC10M007486 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G007480 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.4 3366 6.5 PKNOX1 ZNF2 YY1 CBX5 ZNF143 REST TSHZ1 TBX21 MAFF ZNF610 SFMBT2 TAF3 KIN RNU6-535P GC10M007486 LOC105376388
GH10G007487 1.3 Ensembl ENCODE dbSUPER 0.7 -1.8 -1757 1.9 CTCF PKNOX1 ZBTB21 NFIB ZSCAN4 FEZF1 RAD21 RARA ZSCAN5C PATZ1 SFMBT2 GC10M007486 RNU6-535P LOC105376390
GH10G007474 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.3 11303 1.6 CTCF PKNOX1 ZIC2 GLIS2 POLR2A CBX5 ZBTB48 EED PATZ1 SCRT2 SFMBT2 LOC105376388 RNU6-535P GC10M007486
GH10G007491 0.9 ENCODE dbSUPER 0.7 -4.4 -4426 0.0 GATAD2A SOX5 TBP SOX13 ARID4B DMAP1 NFIL3 KLF16 MXD3 SMAD4 LOC105376390 ITIH5 RNU6-535P GC10M007486
GH10G007478 1 ENCODE dbSUPER 0.4 +7.7 7688 1.4 MTA2 NR2F1 BHLHE40 TRIM22 GATAD2B ZEB2 DPF2 OSR2 ZFP69B ARID3A GC10M007486 LOC105376388 RNU6-535P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC10M007486 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC10M007486 Gene

Chromosome:
10
Start:
7,486,702 bp from pter
End:
7,486,809 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC10M007486 Gene

Genes around GC10M007486 on UCSC Golden Path with GeneCards custom track

GC10M007486 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC10M007486 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC10M007486 Gene

Proteins for GC10M007486 Gene

Post-translational modifications for GC10M007486 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC10M007486 Gene

Domains & Families for GC10M007486 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC10M007486 Gene

Function for GC10M007486 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC10M007486 Gene

Localization for GC10M007486 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC10M007486 Gene

Pathways & Interactions for GC10M007486 Gene

SuperPathways for GC10M007486 Gene

No Data Available

Interacting Proteins for GC10M007486 Gene

Gene Ontology (GO) - Biological Process for GC10M007486 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC10M007486 Gene

Drugs & Compounds for GC10M007486 Gene

No Compound Related Data Available

Transcripts for GC10M007486 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC10M007486 Gene

No ASD Table

Relevant External Links for GC10M007486 Gene

GeneLoc Exon Structure for
GC10M007486

No data available for mRNA/cDNA for GC10M007486 Gene

Expression for GC10M007486 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC10M007486 Gene

Orthologs for GC10M007486 Gene

No data available for Orthologs and Evolution for GC10M007486 Gene

Paralogs for GC10M007486 Gene

No data available for Paralogs for GC10M007486 Gene

Variants for GC10M007486 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC10M007486 Gene

Disorders for GC10M007486 Gene

No disorders were found for GC10M007486 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC10M007486 Gene

Publications for GC10M007486 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC10M007486 Gene

Sources for GC10M007486 Gene

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