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Aliases for GC0YP025725 Gene

Subcategory (RNA class) for GC0YP025725 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0YP025725 Gene

No Aliases found

ORGUL Members for GC0YP025725 Gene

No data available for External Ids for GC0YP025725 Gene

Summaries for GC0YP025725 Gene

GeneCards Summary for GC0YP025725 Gene

GC0YP025725 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0YP025725 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC0YP025725 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0YP025725 Gene

Genomics for GC0YP025725 Gene

Genomic Location for GC0YP025725 Gene

Chromosome:
Y
Start:
25,723,341 bp from pter
End:
25,723,495 bp from pter
Size:
155 bases
Orientation:
Plus strand

Genomic View for GC0YP025725 Gene

Genes around GC0YP025725 on UCSC Golden Path with GeneCards custom track

GC0YP025725 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0YP025725 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements , Cytogenetic band and RefSeq DNA sequence for GC0YP025725 Gene

Proteins for GC0YP025725 Gene

Post-translational modifications for GC0YP025725 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0YP025725 Gene

Domains & Families for GC0YP025725 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0YP025725 Gene

Function for GC0YP025725 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0YP025725 Gene

Localization for GC0YP025725 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0YP025725 Gene

Pathways & Interactions for GC0YP025725 Gene

SuperPathways for GC0YP025725 Gene

No Data Available

Interacting Proteins for GC0YP025725 Gene

Gene Ontology (GO) - Biological Process for GC0YP025725 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0YP025725 Gene

Drugs & Compounds for GC0YP025725 Gene

No Compound Related Data Available

Transcripts for GC0YP025725 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0YP025725 Gene

No ASD Table

Relevant External Links for GC0YP025725 Gene

GeneLoc Exon Structure for
GC0YP025725

No data available for mRNA/cDNA for GC0YP025725 Gene

Expression for GC0YP025725 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0YP025725 Gene

Orthologs for GC0YP025725 Gene

No data available for Orthologs and Evolution for GC0YP025725 Gene

Paralogs for GC0YP025725 Gene

No data available for Paralogs for GC0YP025725 Gene

Variants for GC0YP025725 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0YP025725 Gene

Disorders for GC0YP025725 Gene

No disorders were found for GC0YP025725 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0YP025725 Gene

Publications for GC0YP025725 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC0YP025725 Gene

Sources for GC0YP025725 Gene

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