Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC0XP139886 Gene

Subcategory (RNA class) for GC0XP139886 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XP139886 Gene

No Aliases found

ORGUL Members for GC0XP139886 Gene

No data available for External Ids for GC0XP139886 Gene

Summaries for GC0XP139886 Gene

GeneCards Summary for GC0XP139886 Gene

GC0XP139886 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XP139886 Gene

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

Additional gene information for GC0XP139886 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XP139886 Gene

Genomics for GC0XP139886 Gene

Regulatory Elements for GC0XP139886 Gene

Enhancers for GC0XP139886 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH139880 0.8 Ensembl ENCODE 0.7 -3.6 -3587 2 NFIC PKNOX1 JUND FOXK2 JUN NFYB PRDM10 GC0XP139886 GC0XP139826
GH0XH139831 0.6 Ensembl 0.2 -53.6 -53579 1 ELK4 PRDM6 IKZF1 PRDM10 IKZF2 RUNX3 TRIM28 TCF7L2 ZXDB GC0XP139826 GC0XP139886
GH0XH139847 0.3 FANTOM5 0.3 -37.8 -37775 0 CXorf66 GC0XP139826 GC0XP139886
GH0XH139851 0.2 ENCODE 0.3 -34.3 -34251 0 RNU6ATAC23P GC0XP139826 GC0XP139886
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XP139886 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XP139886 Gene

Chromosome:
X
Start:
139,885,480 bp from pter
End:
139,885,603 bp from pter
Size:
124 bases
Orientation:
Plus strand

Genomic View for GC0XP139886 Gene

Genes around GC0XP139886 on UCSC Golden Path with GeneCards custom track

GC0XP139886 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XP139886 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XP139886 Gene

Proteins for GC0XP139886 Gene

Post-translational modifications for GC0XP139886 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XP139886 Gene

Domains & Families for GC0XP139886 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XP139886 Gene

Function for GC0XP139886 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XP139886 Gene

Localization for GC0XP139886 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XP139886 Gene

Pathways & Interactions for GC0XP139886 Gene

SuperPathways for GC0XP139886 Gene

No Data Available

Interacting Proteins for GC0XP139886 Gene

Gene Ontology (GO) - Biological Process for GC0XP139886 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XP139886 Gene

Drugs & Compounds for GC0XP139886 Gene

No Compound Related Data Available

Transcripts for GC0XP139886 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XP139886 Gene

No ASD Table

Relevant External Links for GC0XP139886 Gene

GeneLoc Exon Structure for
GC0XP139886

No data available for mRNA/cDNA for GC0XP139886 Gene

Expression for GC0XP139886 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XP139886 Gene

Orthologs for GC0XP139886 Gene

No data available for Orthologs and Evolution for GC0XP139886 Gene

Paralogs for GC0XP139886 Gene

No data available for Paralogs for GC0XP139886 Gene

Variants for GC0XP139886 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XP139886 Gene

Disorders for GC0XP139886 Gene

No disorders were found for GC0XP139886 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XP139886 Gene

Publications for GC0XP139886 Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla GC … Padgett RA (RNA (New York, N.Y.) 1999) 1

Products for GC0XP139886 Gene

Sources for GC0XP139886 Gene

Content
Loading form....