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Aliases for GC0XP048563 Gene

Subcategory (RNA class) for GC0XP048563 Gene

snoRNA

Quality Score for this RNA gene is

1

Aliases for GC0XP048563 Gene

No Aliases found

ORGUL Members for GC0XP048563 Gene

No data available for External Ids for GC0XP048563 Gene

Summaries for GC0XP048563 Gene

GeneCards Summary for GC0XP048563 Gene

GC0XP048563 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XP048563 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

Additional gene information for GC0XP048563 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XP048563 Gene

Genomics for GC0XP048563 Gene

Regulatory Elements for GC0XP048563 Gene

Enhancers for GC0XP048563 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH048538 1.1 ENCODE 0.3 -22.2 -22173 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS TBC1D25 ENSG00000204620 RBM3 PORCN LOC101927635 FTSJ1 RN7SL262P ZNF630 ENSG00000228343 ZNF182
GH0XH048558 0.4 ENCODE 0.7 -3.3 -3311 1 FOSL1 JUN ENSG00000228343 GC0XP048563 TBC1D25
GH0XH048548 0.7 ENCODE 0.4 -13.1 -13059 1 SOX5 SOX13 TEAD1 CEBPG PPARG THRB RARA TEAD3 NR2F6 SMAD4 ENSG00000204620 RBM3 LOC101927635 PORCN EBP FTSJ1 TBC1D25 GC0XP048563
GH0XH048550 0.4 Ensembl 0.4 -11.8 -11781 0 RUNX3 LOC101927635 PORCN EBP TBC1D25 GC0XP048563
GH0XH048551 0.4 Ensembl 0.4 -11.3 -11281 0 EGR2 TBC1D25 GC0XP048563
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XP048563 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XP048563 Gene

Chromosome:
X
Start:
48,562,081 bp from pter
End:
48,562,409 bp from pter
Size:
329 bases
Orientation:
Plus strand

Genomic View for GC0XP048563 Gene

Genes around GC0XP048563 on UCSC Golden Path with GeneCards custom track

GC0XP048563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XP048563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XP048563 Gene

Proteins for GC0XP048563 Gene

Post-translational modifications for GC0XP048563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XP048563 Gene

Domains & Families for GC0XP048563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XP048563 Gene

Function for GC0XP048563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XP048563 Gene

Localization for GC0XP048563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XP048563 Gene

Pathways & Interactions for GC0XP048563 Gene

SuperPathways for GC0XP048563 Gene

No Data Available

Interacting Proteins for GC0XP048563 Gene

Gene Ontology (GO) - Biological Process for GC0XP048563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XP048563 Gene

Drugs & Compounds for GC0XP048563 Gene

No Compound Related Data Available

Transcripts for GC0XP048563 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XP048563 Gene

No ASD Table

Relevant External Links for GC0XP048563 Gene

GeneLoc Exon Structure for
GC0XP048563

No data available for mRNA/cDNA for GC0XP048563 Gene

Expression for GC0XP048563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XP048563 Gene

Orthologs for GC0XP048563 Gene

No data available for Orthologs and Evolution for GC0XP048563 Gene

Paralogs for GC0XP048563 Gene

No data available for Paralogs for GC0XP048563 Gene

Variants for GC0XP048563 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XP048563 Gene

Disorders for GC0XP048563 Gene

No disorders were found for GC0XP048563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XP048563 Gene

Publications for GC0XP048563 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC0XP048563 Gene

Sources for GC0XP048563 Gene

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