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Aliases for GC0XP047390 Gene

Subcategory (RNA class) for GC0XP047390 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC0XP047390 Gene

No Aliases found

ORGUL Members for GC0XP047390 Gene

No data available for External Ids for GC0XP047390 Gene

Summaries for GC0XP047390 Gene

GeneCards Summary for GC0XP047390 Gene

GC0XP047390 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XP047390 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC0XP047390 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XP047390 Gene

Genomics for GC0XP047390 Gene

Regulatory Elements for GC0XP047390 Gene

Enhancers for GC0XP047390 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH047384 0.7 ENCODE 0.7 -3.9 -3942 0 SOX5 SOX13 CTCF ZNF654 RB1 SOX6 TRIM22 ZEB2 REST RAD21 GC0XP047390 ZNF157
GH0XH047380 0.9 Ensembl ENCODE 0.4 -7.9 -7939 1 HDGF SP3 NRF1 NFXL1 ZFHX2 NFIC ZNF341 IKZF1 ZNF512 TARDBP INE1 UBA1 ZNF41 GC0XP047390 ZNF157
GH0XH047381 0.2 ENCODE 0.4 -6.6 -6570 0 INE1 UBA1 GC0XP047390 ZNF157
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XP047390 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XP047390 Gene

Chromosome:
X
Start:
47,388,648 bp from pter
End:
47,388,777 bp from pter
Size:
130 bases
Orientation:
Plus strand

Genomic View for GC0XP047390 Gene

Genes around GC0XP047390 on UCSC Golden Path with GeneCards custom track

GC0XP047390 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XP047390 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XP047390 Gene

Proteins for GC0XP047390 Gene

Post-translational modifications for GC0XP047390 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XP047390 Gene

Domains & Families for GC0XP047390 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XP047390 Gene

Function for GC0XP047390 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XP047390 Gene

Localization for GC0XP047390 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XP047390 Gene

Pathways & Interactions for GC0XP047390 Gene

SuperPathways for GC0XP047390 Gene

No Data Available

Interacting Proteins for GC0XP047390 Gene

Gene Ontology (GO) - Biological Process for GC0XP047390 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XP047390 Gene

Drugs & Compounds for GC0XP047390 Gene

No Compound Related Data Available

Transcripts for GC0XP047390 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XP047390 Gene

No ASD Table

Relevant External Links for GC0XP047390 Gene

GeneLoc Exon Structure for
GC0XP047390

No data available for mRNA/cDNA for GC0XP047390 Gene

Expression for GC0XP047390 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XP047390 Gene

Orthologs for GC0XP047390 Gene

No data available for Orthologs and Evolution for GC0XP047390 Gene

Paralogs for GC0XP047390 Gene

No data available for Paralogs for GC0XP047390 Gene

Variants for GC0XP047390 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XP047390 Gene

Disorders for GC0XP047390 Gene

No disorders were found for GC0XP047390 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XP047390 Gene

Publications for GC0XP047390 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC0XP047390 Gene

Sources for GC0XP047390 Gene

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