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Aliases for GC0XM136880 Gene

Subcategory (RNA class) for GC0XM136880 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC0XM136880 Gene

No Aliases found

No data available for External Ids for GC0XM136880 Gene

Summaries for GC0XM136880 Gene

GeneCards Summary for GC0XM136880 Gene

GC0XM136880 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XM136880 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC0XM136880 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM136880 Gene

Genomics for GC0XM136880 Gene

Regulatory Elements for GC0XM136880 Gene

Enhancers for GC0XM136880 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH136878 1.1 ENCODE 0.7 -0.9 -863 2 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS PAF1 SRRM1P3 LOC100420958 ARHGEF6 ENSG00000232611 GC0XM136880 GC0XM136881 RBMX SNORD61
GH0XH136850 0.7 Ensembl 0.3 +28.7 28671 0 SOX5 SOX13 GATAD2A FOXA2 CEBPB CEBPG NR2F2 IRF9 ATF4 PRDM6 ARHGEF6 ENSG00000232611 GC0XM136880 GC0XM136881 SNORD61
GH0XH136856 0.5 Ensembl 0.3 +22.7 22662 0 IKZF1 NBN BATF IKZF2 SPI1 ARHGEF6 ENSG00000232611 GC0XM136880 GC0XM136881 SNORD61
GH0XH136858 0.3 FANTOM5 0.3 +20.7 20678 0 HTATSF1 ENSG00000232611 GC0XM136881 SNORD61 GC0XM136880
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM136880 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM136880 Gene

Chromosome:
X
Start:
136,879,198 bp from pter
End:
136,879,271 bp from pter
Size:
74 bases
Orientation:
Minus strand

Genomic View for GC0XM136880 Gene

Genes around GC0XM136880 on UCSC Golden Path with GeneCards custom track

GC0XM136880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM136880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM136880 Gene

Proteins for GC0XM136880 Gene

Post-translational modifications for GC0XM136880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM136880 Gene

Domains & Families for GC0XM136880 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM136880 Gene

Function for GC0XM136880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM136880 Gene

Localization for GC0XM136880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM136880 Gene

Pathways & Interactions for GC0XM136880 Gene

SuperPathways for GC0XM136880 Gene

No Data Available

Interacting Proteins for GC0XM136880 Gene

Gene Ontology (GO) - Biological Process for GC0XM136880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM136880 Gene

Drugs & Compounds for GC0XM136880 Gene

No Compound Related Data Available

Transcripts for GC0XM136880 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM136880 Gene

No ASD Table

Relevant External Links for GC0XM136880 Gene

GeneLoc Exon Structure for
GC0XM136880

No data available for mRNA/cDNA for GC0XM136880 Gene

Expression for GC0XM136880 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM136880 Gene

Orthologs for GC0XM136880 Gene

No data available for Orthologs and Evolution for GC0XM136880 Gene

Paralogs for GC0XM136880 Gene

No data available for Paralogs for GC0XM136880 Gene

Variants for GC0XM136880 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM136880 Gene

Disorders for GC0XM136880 Gene

No disorders were found for GC0XM136880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM136880 Gene

Publications for GC0XM136880 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for GC0XM136880 Gene

Sources for GC0XM136880 Gene

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