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Aliases for GC0XM134761 Gene

Subcategory (RNA class) for GC0XM134761 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM134761 Gene

No Aliases found

ORGUL Members for GC0XM134761 Gene

No data available for External Ids for GC0XM134761 Gene

Summaries for GC0XM134761 Gene

GeneCards Summary for GC0XM134761 Gene

GC0XM134761 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM134761 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

Additional gene information for GC0XM134761 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM134761 Gene

Genomics for GC0XM134761 Gene

Regulatory Elements for GC0XM134761 Gene

Enhancers for GC0XM134761 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH134714 1.3 Ensembl ENCODE 0.3 +43.2 43215 4 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF766 GLIS2 GATA2 FOS KLF7 ETDB SAGE4P RNU4-44P GC0XM134761 GC0XP134651
GH0XH134745 0.7 Ensembl ENCODE 0.4 +14.1 14059 1 JUND SPI1 GC0XM134761 RNU4-44P GC0XP134651
GH0XH134732 0.9 Ensembl ENCODE 0.3 +26.1 26139 3 ZNF398 ZIC2 OSR2 JUND ZFHX2 GLIS1 ZNF341 EGR2 GC0XM134761 RNU4-44P GC0XP134651
GH0XH134751 0.6 ENCODE 0.4 +7.4 7415 2 CTCF ZNF654 REST RAD21 GATA3 SCRT2 SMC3 HMBOX1 PRDM10 LINC00629 MIR503 MIR503HG MIR450A1 MIR450A2 MIR450B MIR542 GC0XM134761 RNU4-44P GC0XP134651
GH0XH134713 1.2 FANTOM5 ENCODE 0.2 +46.4 46398 0 PKNOX1 ARNT INSM2 ZNF76 KLF17 FEZF1 GLIS2 ZNF366 SP3 TSHZ1 RNU4-44P GC0XM134761 GC0XP134651
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM134761 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM134761 Gene

Chromosome:
X
Start:
134,760,207 bp from pter
End:
134,760,348 bp from pter
Size:
142 bases
Orientation:
Minus strand

Genomic View for GC0XM134761 Gene

Genes around GC0XM134761 on UCSC Golden Path with GeneCards custom track

GC0XM134761 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM134761 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM134761 Gene

Proteins for GC0XM134761 Gene

Post-translational modifications for GC0XM134761 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM134761 Gene

Domains & Families for GC0XM134761 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM134761 Gene

Function for GC0XM134761 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM134761 Gene

Localization for GC0XM134761 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM134761 Gene

Pathways & Interactions for GC0XM134761 Gene

SuperPathways for GC0XM134761 Gene

No Data Available

Interacting Proteins for GC0XM134761 Gene

Gene Ontology (GO) - Biological Process for GC0XM134761 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM134761 Gene

Drugs & Compounds for GC0XM134761 Gene

No Compound Related Data Available

Transcripts for GC0XM134761 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM134761 Gene

No ASD Table

Relevant External Links for GC0XM134761 Gene

GeneLoc Exon Structure for
GC0XM134761

No data available for mRNA/cDNA for GC0XM134761 Gene

Expression for GC0XM134761 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM134761 Gene

Orthologs for GC0XM134761 Gene

No data available for Orthologs and Evolution for GC0XM134761 Gene

Paralogs for GC0XM134761 Gene

No data available for Paralogs for GC0XM134761 Gene

Variants for GC0XM134761 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM134761 Gene

Disorders for GC0XM134761 Gene

No disorders were found for GC0XM134761 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM134761 Gene

Publications for GC0XM134761 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC0XM134761 Gene

Sources for GC0XM134761 Gene

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