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Aliases for GC0XM133239 Gene

Subcategory (RNA class) for GC0XM133239 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM133239 Gene

No Aliases found

ORGUL Members for GC0XM133239 Gene

No data available for External Ids for GC0XM133239 Gene

Summaries for GC0XM133239 Gene

GeneCards Summary for GC0XM133239 Gene

GC0XM133239 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM133239 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC0XM133239 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM133239 Gene

Genomics for GC0XM133239 Gene

Regulatory Elements for GC0XM133239 Gene

Enhancers for GC0XM133239 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH133229 0.7 ENCODE 0.4 +9.2 9239 0 PKNOX1 JUN ZEB1 GATA3 ZNF366 FOSL2 FOS SMARCE1 TSHZ1 PRDM6 PIR41819 GC0XM133239 RNU1-115P
GH0XH133250 0.6 ENCODE 0.4 -11.9 -11893 0 FOXA2 FOXA3 CEBPG ZNF644 TEAD3 CEBPA BCL6 HNF4A RNU1-115P GC0XM133239 GPC4
GH0XH133264 0.4 ENCODE 0.3 -26.6 -26630 1 CTBP2 GPC4 RNU1-115P GC0XM133239
GH0XH133259 0.3 FANTOM5 0.3 -21.1 -21116 0 USP26 RNU1-115P GC0XM133239 GPC4
GH0XH133411 0.9 ENCODE 0.1 -175.4 -175393 4 PKNOX1 ZNF2 GLIS2 SCRT2 SP3 ZEB2 ELF1 ZNF217 ZNF610 KLF16 GPC4 GC0XM133239 RNU1-115P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM133239 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM133239 Gene

Chromosome:
X
Start:
133,238,654 bp from pter
End:
133,238,816 bp from pter
Size:
163 bases
Orientation:
Minus strand

Genomic View for GC0XM133239 Gene

Genes around GC0XM133239 on UCSC Golden Path with GeneCards custom track

GC0XM133239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM133239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM133239 Gene

Proteins for GC0XM133239 Gene

Post-translational modifications for GC0XM133239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM133239 Gene

Domains & Families for GC0XM133239 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM133239 Gene

Function for GC0XM133239 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM133239 Gene

Localization for GC0XM133239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC0XM133239 Gene

Pathways & Interactions for GC0XM133239 Gene

SuperPathways for GC0XM133239 Gene

No Data Available

Interacting Proteins for GC0XM133239 Gene

Gene Ontology (GO) - Biological Process for GC0XM133239 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM133239 Gene

Drugs & Compounds for GC0XM133239 Gene

No Compound Related Data Available

Transcripts for GC0XM133239 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM133239 Gene

No ASD Table

Relevant External Links for GC0XM133239 Gene

GeneLoc Exon Structure for
GC0XM133239

No data available for mRNA/cDNA for GC0XM133239 Gene

Expression for GC0XM133239 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM133239 Gene

Orthologs for GC0XM133239 Gene

No data available for Orthologs and Evolution for GC0XM133239 Gene

Paralogs for GC0XM133239 Gene

No data available for Paralogs for GC0XM133239 Gene

Variants for GC0XM133239 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM133239 Gene

Disorders for GC0XM133239 Gene

No disorders were found for GC0XM133239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM133239 Gene

Publications for GC0XM133239 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC0XM133239 Gene

Sources for GC0XM133239 Gene

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