Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC0XM119788 Gene

Subcategory (RNA class) for GC0XM119788 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC0XM119788 Gene

No Aliases found

ORGUL Members for GC0XM119788 Gene

No data available for External Ids for GC0XM119788 Gene

Summaries for GC0XM119788 Gene

GeneCards Summary for GC0XM119788 Gene

GC0XM119788 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XM119788 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM119788 Gene

Genomics for GC0XM119788 Gene

Regulatory Elements for GC0XM119788 Gene

Enhancers for GC0XM119788 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG119789 1.1 ENCODE 0.7 -3.8 -3780 3.7 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 KLF13 ZNF263 SP3 EEF1A1P30 NKAP UPF3B RNF113A GC0XM119788 GC0XM119789 RPL39 SNORA69
GH0XG119784 0.7 ENCODE 0.7 +2.4 2412 0.2 HDGF CTCF ZNF280D L3MBTL2 SMAD5 BHLHE40 NR2F1 TRIM22 BACH1 RAD21 GC0XM119788 GC0XM119789 SNORA69 SOWAHD
GH0XG119775 0.8 Ensembl ENCODE 0.4 +11.8 11750 1.2 POLR2A EED IKZF1 MLLT1 IKZF2 PRDM1 SPI1 RHOXF1-AS1 GC0XM119788 GC0XM119789 SNORA69 SOWAHD
GH0XG119782 0.4 Ensembl 0.7 +4.8 4784 0.2 POLR2A GC0XM119788 GC0XM119789 SNORA69 SOWAHD
GH0XG119779 0.6 ENCODE 0.4 +7.6 7592 0.2 HDGF CTCF ZNF654 TRIM22 ZEB2 REST RAD21 SMC3 ZNF143 MLLT1 GC0XM119788 GC0XM119789 SNORA69 SOWAHD
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM119788 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM119788 Gene

Chromosome:
X
Start:
119,787,352 bp from pter
End:
119,787,484 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for GC0XM119788 Gene

Genes around GC0XM119788 on UCSC Golden Path with GeneCards custom track

GC0XM119788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM119788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM119788 Gene

Proteins for GC0XM119788 Gene

Post-translational modifications for GC0XM119788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM119788 Gene

Domains & Families for GC0XM119788 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM119788 Gene

Function for GC0XM119788 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM119788 Gene

Localization for GC0XM119788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC0XM119788 Gene

Pathways & Interactions for GC0XM119788 Gene

SuperPathways for GC0XM119788 Gene

No Data Available

Interacting Proteins for GC0XM119788 Gene

Gene Ontology (GO) - Biological Process for GC0XM119788 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM119788 Gene

Drugs & Compounds for GC0XM119788 Gene

No Compound Related Data Available

Transcripts for GC0XM119788 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM119788 Gene

No ASD Table

Relevant External Links for GC0XM119788 Gene

GeneLoc Exon Structure for
GC0XM119788

No data available for mRNA/cDNA for GC0XM119788 Gene

Expression for GC0XM119788 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM119788 Gene

Orthologs for GC0XM119788 Gene

No data available for Orthologs and Evolution for GC0XM119788 Gene

Paralogs for GC0XM119788 Gene

No data available for Paralogs for GC0XM119788 Gene

Variants for GC0XM119788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM119788 Gene

Disorders for GC0XM119788 Gene

No disorders were found for GC0XM119788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM119788 Gene

Publications for GC0XM119788 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T. … Sugano S. (PLoS Biol. 2004) 1

Products for GC0XM119788 Gene

Sources for GC0XM119788 Gene

Content
Loading form....