Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC0XM048777 Gene

Subcategory (RNA class) for GC0XM048777 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC0XM048777 Gene

No Aliases found

ORGUL Members for GC0XM048777 Gene

No data available for External Ids for GC0XM048777 Gene

Summaries for GC0XM048777 Gene

GeneCards Summary for GC0XM048777 Gene

GC0XM048777 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM048777 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM048777 Gene

Genomics for GC0XM048777 Gene

Regulatory Elements for GC0XM048777 Gene

Enhancers for GC0XM048777 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG048776 0.7 dbSUPER 0.7 0.0 -29 1.3 PKNOX1 L3MBTL2 NRF1 MAFG DPF2 ZNF592 FOSL1 JUND ZNF316 IKZF1 ERAS HDAC6 GC0XM048777 RNU6-29P GATA1
GH0XG048782 1.2 ENCODE dbSUPER 0.4 -6.1 -6064 1.2 ATF1 ARNT SIN3A TCF12 ZNF766 CBX5 ELK1 GATA2 KDM4B NCOA1 GATA1 GC0XM048777 RNU6-29P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM048777 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM048777 Gene

Chromosome:
X
Start:
48,776,964 bp from pter
End:
48,777,071 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC0XM048777 Gene

Genes around GC0XM048777 on UCSC Golden Path with GeneCards custom track

GC0XM048777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM048777 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM048777 Gene

Proteins for GC0XM048777 Gene

Post-translational modifications for GC0XM048777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM048777 Gene

Domains & Families for GC0XM048777 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM048777 Gene

Function for GC0XM048777 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM048777 Gene

Localization for GC0XM048777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC0XM048777 Gene

Pathways & Interactions for GC0XM048777 Gene

SuperPathways for GC0XM048777 Gene

No Data Available

Interacting Proteins for GC0XM048777 Gene

Gene Ontology (GO) - Biological Process for GC0XM048777 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC0XM048777 Gene

Drugs & Compounds for GC0XM048777 Gene

No Compound Related Data Available

Transcripts for GC0XM048777 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM048777 Gene

No ASD Table

Relevant External Links for GC0XM048777 Gene

GeneLoc Exon Structure for
GC0XM048777

No data available for mRNA/cDNA for GC0XM048777 Gene

Expression for GC0XM048777 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM048777 Gene

Orthologs for GC0XM048777 Gene

No data available for Orthologs and Evolution for GC0XM048777 Gene

Paralogs for GC0XM048777 Gene

No data available for Paralogs for GC0XM048777 Gene

Variants for GC0XM048777 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM048777 Gene

Disorders for GC0XM048777 Gene

No disorders were found for GC0XM048777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM048777 Gene

Publications for GC0XM048777 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC0XM048777 Gene

Sources for GC0XM048777 Gene

Content
Loading form....