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Aliases for GC0XM015916 Gene

Subcategory (RNA class) for GC0XM015916 Gene


Quality Score for this RNA gene is


Aliases for GC0XM015916 Gene

No Aliases found

ORGUL Members for GC0XM015916 Gene

No data available for External Ids for GC0XM015916 Gene

Summaries for GC0XM015916 Gene

GeneCards Summary for GC0XM015916 Gene

GC0XM015916 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC0XM015916 Gene

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM015916 Gene

Genomics for GC0XM015916 Gene

Regulatory Elements for GC0XM015916 Gene

Enhancers for GC0XM015916 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG015915 1 Ensembl ENCODE 0.7 -0.2 -165 1.3 ZFP64 ZBTB40 ZNF697 GATA2 ETV6 ZBTB11 ZNF426 ZBTB8A ZNF394 ZNF518A ZRSR2 AP1S2 GC0XM015916 RNU5F-7P SETP15
GH0XG015908 1.3 FANTOM5 Ensembl ENCODE 0.4 +5.9 5869 4.3 SOX13 CTCF ATF1 RBBP5 CEBPG RAD21 EED SMC3 IKZF2 CREM ZRSR2 AP1S2 RNU5F-7P GC0XM015916
GH0XG015902 1 Ensembl ENCODE 0.4 +12.8 12842 1.4 PKNOX1 TBL1XR1 ZBTB40 RELA ARID3A EGR1 CBX5 NFYB EED ZNF207 AP1S2 GC0XM015916 RNU5F-7P
GH0XG015853 1.4 FANTOM5 ENCODE 0.2 +61.0 60957 3.8 HDGF PKNOX1 CREB3L1 SIN3A FEZF1 ZNF207 ZNF263 SP3 NFYC REST AP1S2 ZRSR2 CA5B RNU5F-7P GC0XM015916
GH0XG015883 0.9 ENCODE 0.3 +33.0 33011 0.2 ATF1 BMI1 YY1 ZNF766 ELK1 GATA2 FOS CAVIN1 ZBTB11 USF2 AP1S2 GC0XM015916 RNU5F-7P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM015916 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM015916 Gene

15,916,187 bp from pter
15,916,303 bp from pter
117 bases
Minus strand

Genomic View for GC0XM015916 Gene

Genes around GC0XM015916 on UCSC Golden Path with GeneCards custom track

GC0XM015916 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM015916 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM015916 Gene

Proteins for GC0XM015916 Gene

Post-translational modifications for GC0XM015916 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM015916 Gene

Domains & Families for GC0XM015916 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM015916 Gene

Function for GC0XM015916 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM015916 Gene

Localization for GC0XM015916 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC0XM015916 Gene

Pathways & Interactions for GC0XM015916 Gene

SuperPathways for GC0XM015916 Gene

No Data Available

Interacting Proteins for GC0XM015916 Gene

Gene Ontology (GO) - Biological Process for GC0XM015916 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC0XM015916 Gene

Drugs & Compounds for GC0XM015916 Gene

No Compound Related Data Available

Transcripts for GC0XM015916 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM015916 Gene

No ASD Table

Relevant External Links for GC0XM015916 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC0XM015916 Gene

Expression for GC0XM015916 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM015916 Gene

Orthologs for GC0XM015916 Gene

No data available for Orthologs and Evolution for GC0XM015916 Gene

Paralogs for GC0XM015916 Gene

No data available for Paralogs for GC0XM015916 Gene

Variants for GC0XM015916 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM015916 Gene

Disorders for GC0XM015916 Gene

No disorders were found for GC0XM015916 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM015916 Gene

Publications for GC0XM015916 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M. … Bindereif A. (J. Biol. Chem. 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC0XM015916 Gene

Sources for GC0XM015916 Gene

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