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Aliases for GC0XM003533 Gene

Subcategory (RNA class) for GC0XM003533 Gene


Quality Score for this RNA gene is


Aliases for GC0XM003533 Gene

No Aliases found

ORGUL Members for GC0XM003533 Gene

No data available for External Ids for GC0XM003533 Gene

Summaries for GC0XM003533 Gene

GeneCards Summary for GC0XM003533 Gene

GC0XM003533 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC0XM003533 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC0XM003533 Gene

Genomics for GC0XM003533 Gene

Regulatory Elements for GC0XM003533 Gene

Enhancers for GC0XM003533 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG003548 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.1 -17104 1.3 CTCF SMARCA4 SMC3 EBF1 RAD21 MXRA5 PIR50228 ENSG00000212214 GC0XM003533
GH0XG003518 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.5 11487 4.7 FOSL1 JUND FOS MXRA5 RNU6-146P ARSF ENSG00000212214 GC0XM003533 GC0XP003465
GH0XG003525 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5400 2.7 MNT MAFK MXRA5 GC0XM003533 ENSG00000212214 GC0XP003465
GH0XG003529 0.6 ENCODE dbSUPER 0.7 +2.4 2386 1.1 ATF2 MXRA5 GC0XM003533 ENSG00000212214 GC0XP003465
GH0XG003528 0.5 ENCODE dbSUPER 0.7 +3.8 3837 0.2 ENSG00000212214 GC0XM003533 GC0XP003465
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC0XM003533 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC0XM003533 Gene

3,532,116 bp from pter
3,532,251 bp from pter
136 bases
Minus strand

Genomic View for GC0XM003533 Gene

Genes around GC0XM003533 on UCSC Golden Path with GeneCards custom track

GC0XM003533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC0XM003533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC0XM003533 Gene

Proteins for GC0XM003533 Gene

Post-translational modifications for GC0XM003533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC0XM003533 Gene

Domains & Families for GC0XM003533 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC0XM003533 Gene

Function for GC0XM003533 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC0XM003533 Gene

Localization for GC0XM003533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC0XM003533 Gene

Pathways & Interactions for GC0XM003533 Gene

SuperPathways for GC0XM003533 Gene

No Data Available

Interacting Proteins for GC0XM003533 Gene

Gene Ontology (GO) - Biological Process for GC0XM003533 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC0XM003533 Gene

Drugs & Compounds for GC0XM003533 Gene

No Compound Related Data Available

Transcripts for GC0XM003533 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC0XM003533 Gene

No ASD Table

Relevant External Links for GC0XM003533 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC0XM003533 Gene

Expression for GC0XM003533 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC0XM003533 Gene

Orthologs for GC0XM003533 Gene

No data available for Orthologs and Evolution for GC0XM003533 Gene

Paralogs for GC0XM003533 Gene

No data available for Paralogs for GC0XM003533 Gene

Variants for GC0XM003533 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC0XM003533 Gene

Disorders for GC0XM003533 Gene

No disorders were found for GC0XM003533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC0XM003533 Gene

Publications for GC0XM003533 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1
  2. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 1

Products for GC0XM003533 Gene

Sources for GC0XM003533 Gene

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