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Aliases for GC09P133415 Gene

Subcategory (RNA class) for GC09P133415 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC09P133415 Gene

No Aliases found

No data available for External Ids for GC09P133415 Gene

Summaries for GC09P133415 Gene

GeneCards Summary for GC09P133415 Gene

GC09P133415 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09P133415 Gene - the ORGUL cluster for this gene includes several descriptions:

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

  • Small nucleolar RNA SNORD24: U24 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box motifs [1]. C/D box snoRNAs have been shown to act as methylation guides for a number of RNA targets [2,3]. U24 is encoded within an intron of the gene for ribosomal protein L7a in mammals, chicken and Fugu [4]. The U76 snoRNA is found in an intron of the uRNA host gene (UHG) growth arrest specific 5 (GAS5) transcript gene [5]. snoRNAs Z20 and U76 snoRNAs show clear similarity to U24.

View fRNAdb secondary structures for GC09P133415

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P133415 Gene

Genomics for GC09P133415 Gene

Regulatory Elements for GC09P133415 Gene

Enhancers for GC09P133415 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G133346 1.1 ENCODE 0.7 -0.6 -579 4.5 HDGF PKNOX1 CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 SURF1 ADAMTS13 SURF6 RPL7A GC09P133420 GC09P133417 GC09P133415
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P133415 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P133415 Gene

Chromosome:
9
Start:
133,349,395 bp from pter
End:
133,349,470 bp from pter
Size:
76 bases
Orientation:
Plus strand

Genomic View for GC09P133415 Gene

Genes around GC09P133415 on UCSC Golden Path with GeneCards custom track

GC09P133415 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P133415 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P133415 Gene

ORGUL Member Location for GC09P133415 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P133415 Gene

Proteins for GC09P133415 Gene

Post-translational modifications for GC09P133415 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P133415 Gene

Domains & Families for GC09P133415 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P133415 Gene

Function for GC09P133415 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P133415 Gene

Localization for GC09P133415 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P133415 Gene

Pathways & Interactions for GC09P133415 Gene

SuperPathways for GC09P133415 Gene

No Data Available

Interacting Proteins for GC09P133415 Gene

Gene Ontology (GO) - Biological Process for GC09P133415 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P133415 Gene

Drugs & Compounds for GC09P133415 Gene

No Compound Related Data Available

Transcripts for GC09P133415 Gene

fRNAdb Secondary structures for GC09P133415 Gene

  • FR017664
  • FR393255

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P133415 Gene

No ASD Table

Relevant External Links for GC09P133415 Gene

GeneLoc Exon Structure for
GC09P133415

No data available for mRNA/cDNA for GC09P133415 Gene

Expression for GC09P133415 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P133415 Gene

Orthologs for GC09P133415 Gene

No data available for Orthologs and Evolution for GC09P133415 Gene

Paralogs for GC09P133415 Gene

No data available for Paralogs for GC09P133415 Gene

Variants for GC09P133415 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P133415 Gene

Disorders for GC09P133415 Gene

No disorders were found for GC09P133415 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P133415 Gene

Publications for GC09P133415 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T. … Sugano S. (PLoS Biol. 2004) 1

Products for GC09P133415 Gene

Sources for GC09P133415 Gene

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