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Aliases for GC09P133407 Gene

Subcategory (RNA class) for GC09P133407 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC09P133407 Gene

No Aliases found

ORGUL Members for GC09P133407 Gene

No data available for External Ids for GC09P133407 Gene

Summaries for GC09P133407 Gene

GeneCards Summary for GC09P133407 Gene

GC09P133407 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09P133407 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC09P133407

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P133407 Gene

Genomics for GC09P133407 Gene

Genomic Location for GC09P133407 Gene

Chromosome:
9
Start:
133,350,093 bp from pter
End:
133,350,167 bp from pter
Size:
75 bases
Orientation:
Plus strand

Genomic View for GC09P133407 Gene

Genes around GC09P133407 on UCSC Golden Path with GeneCards custom track

GC09P133407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P133407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P133407 Gene

ORGUL Member Location for GC09P133407 gene

No data available for Regulatory Elements , Cytogenetic band and RefSeq DNA sequence for GC09P133407 Gene

Proteins for GC09P133407 Gene

Post-translational modifications for GC09P133407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P133407 Gene

Domains & Families for GC09P133407 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P133407 Gene

Function for GC09P133407 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P133407 Gene

Localization for GC09P133407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P133407 Gene

Pathways & Interactions for GC09P133407 Gene

SuperPathways for GC09P133407 Gene

No Data Available

Interacting Proteins for GC09P133407 Gene

Gene Ontology (GO) - Biological Process for GC09P133407 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P133407 Gene

Drugs & Compounds for GC09P133407 Gene

No Compound Related Data Available

Transcripts for GC09P133407 Gene

fRNAdb Secondary structures for GC09P133407 Gene

  • FR003613
  • FR072090

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P133407 Gene

No ASD Table

Relevant External Links for GC09P133407 Gene

GeneLoc Exon Structure for
GC09P133407

No data available for mRNA/cDNA for GC09P133407 Gene

Expression for GC09P133407 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P133407 Gene

Orthologs for GC09P133407 Gene

No data available for Orthologs and Evolution for GC09P133407 Gene

Paralogs for GC09P133407 Gene

No data available for Paralogs for GC09P133407 Gene

Variants for GC09P133407 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P133407 Gene

Disorders for GC09P133407 Gene

No disorders were found for GC09P133407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P133407 Gene

Publications for GC09P133407 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  4. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C. … Bachellerie J.P. (J. Mol. Biol. 2000) 1
  5. Evolution of U24 and U36 snoRNAs encoded within introns of vertebrate rpL7a gene homologs: unique features of mammalian U36 variants. (PMID: 9703018) Gilley J. … Fried M. (DNA Cell Biol. 1998) 1

Products for GC09P133407 Gene

Sources for GC09P133407 Gene

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