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Aliases for GC09P125856 Gene

Subcategory (RNA class) for GC09P125856 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P125856 Gene

No Aliases found

ORGUL Members for GC09P125856 Gene

No data available for External Ids for GC09P125856 Gene

Summaries for GC09P125856 Gene

GeneCards Summary for GC09P125856 Gene

GC09P125856 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P125856 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P125856

Additional gene information for GC09P125856 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P125856 Gene

Genomics for GC09P125856 Gene

GeneHancer (GH) Regulatory Elements for GC09P125856 Gene

Promoters and enhancers for GC09P125856 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I125854 Enhancer 0.7 ENCODE 550.8 -1.4 -1371 0.2 RFX1 EP300 FOXA1 ZNF217 CTBP1 MAFF JUND PRDM6 GATA3 POLR2A GC09P125856 PBX3 GC09P125762
GH09I125856 Enhancer 0.5 UCNEbase 550.8 +0.3 314 0.3 PKNOX1 GC09P125856 GC09P125878 PBX3
GH09I125829 Enhancer 1.6 UCNEbase FANTOM5 Ensembl ENCODE 0.3 -26.4 -26358 1.4 MEIS2 PKNOX1 BATF IRF4 RAD21 YY1 POLR2A NFATC1 ATF7 ETV6 PBX3 LOC51145 GC09P125856 GC09P125762
GH09I125850 Enhancer 1 UCNEbase 0.4 -5.4 -5417 0.3 ELF3 FOXA2 ARID4B FEZF1 RARA YY1 CREM THAP11 MIXL1 CEBPB LOC51145 PBX3 GC09P125856 GC09P125762
GH09I125844 Enhancer 1 VISTA UCNEbase 0.4 -11.2 -11212 1.8 ATF4 PKNOX1 POLR2A CEBPB ATF7 ZNF548 CEBPG FEZF1 ATF2 GAPVD1 PRPS1P2 GOLGA1 ZBTB43 GC09P125856 GC09P125762 PBX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09P125856 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09P125856 Gene

Genomic Locations for GC09P125856 Gene
chr9:125,856,368-125,856,505
(GRCh38/hg38)
Size:
138 bases
Orientation:
Plus strand

Genomic View for GC09P125856 Gene

Genes around GC09P125856 on UCSC Golden Path with GeneCards custom track

GC09P125856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P125856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P125856 Gene

ORGUL Member Location for GC09P125856 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P125856 Gene

Proteins for GC09P125856 Gene

Post-translational modifications for GC09P125856 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P125856 Gene

Domains & Families for GC09P125856 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P125856 Gene

Function for GC09P125856 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P125856 Gene

Localization for GC09P125856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P125856 Gene

Pathways & Interactions for GC09P125856 Gene

SuperPathways for GC09P125856 Gene

No Data Available

Interacting Proteins for GC09P125856 Gene

Gene Ontology (GO) - Biological Process for GC09P125856 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P125856 Gene

Drugs & Compounds for GC09P125856 Gene

No Compound Related Data Available

Transcripts for GC09P125856 Gene

fRNAdb Secondary structures for GC09P125856 Gene

  • FR161913
  • FR341986
  • FR177410

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P125856 Gene

No ASD Table

Relevant External Links for GC09P125856 Gene

GeneLoc Exon Structure for
GC09P125856

No data available for mRNA/cDNA for GC09P125856 Gene

Expression for GC09P125856 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P125856 Gene

Orthologs for GC09P125856 Gene

No data available for Orthologs and Evolution for GC09P125856 Gene

Paralogs for GC09P125856 Gene

No data available for Paralogs for GC09P125856 Gene

Variants for GC09P125856 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09P125856 Gene

Disorders for GC09P125856 Gene

No disorders were found for GC09P125856 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P125856 Gene

Publications for GC09P125856 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P125856 Gene

Sources for GC09P125856 Gene

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