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Aliases for GC09P125856 Gene

Subcategory (RNA class) for GC09P125856 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P125856 Gene

No Aliases found

ORGUL Members for GC09P125856 Gene

No data available for External Ids for GC09P125856 Gene

Summaries for GC09P125856 Gene

GeneCards Summary for GC09P125856 Gene

GC09P125856 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P125856 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P125856

Additional gene information for GC09P125856 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P125856 Gene

Genomics for GC09P125856 Gene

Regulatory Elements for GC09P125856 Gene

Enhancers for GC09P125856 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H125829 2.3 FANTOM5 Ensembl ENCODE 0.3 -26.4 -26358 1 PKNOX1 JUNB DPF2 BATF RAD21 YY1 POLR2A TARDBP IKZF1 ATF7 PBX3 LOC51145 GC09P125856 GC09P125762
GH09H125844 1.6 VISTA 0.4 -11.2 -11213 1 PKNOX1 POLR2A ATF3 CEBPB FEZF1 ATF7 ZNF548 CEBPG ATF2 GAPVD1 PRPS1P2 GOLGA1 ZBTB43 GC09P125856 GC09P125762
GH09H125760 2.6 VISTA Ensembl ENCODE 0.2 -93.6 -93603 4 PKNOX1 ARNT ZNF76 KLF17 FEZF1 ZNF2 ZEB1 ZNF366 ZSCAN5C TSHZ1 PBX3 GC09P125762 GC09P125856
GH09H125854 0.7 ENCODE 0.7 -1.4 -1372 0 RFX1 EP300 FOXA1 ZNF217 CTBP1 MAFF JUND PRDM6 GATA3 POLR2A PBX3 GC09P125856 GC09P125762
GH09H125823 1 Ensembl ENCODE 0.3 -32.1 -32146 1 BMI1 BATF ZNF664 GATA3 EED SCRT2 ATF7 PRDM10 RUNX3 IKZF2 PBX3 GC09P125856 GC09P125762
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P125856 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P125856 Gene

Chromosome:
9
Start:
125,856,368 bp from pter
End:
125,856,505 bp from pter
Size:
138 bases
Orientation:
Plus strand

Genomic View for GC09P125856 Gene

Genes around GC09P125856 on UCSC Golden Path with GeneCards custom track

GC09P125856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P125856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P125856 Gene

ORGUL Member Location for GC09P125856 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P125856 Gene

Proteins for GC09P125856 Gene

Post-translational modifications for GC09P125856 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P125856 Gene

Domains & Families for GC09P125856 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P125856 Gene

Function for GC09P125856 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P125856 Gene

Localization for GC09P125856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P125856 Gene

Pathways & Interactions for GC09P125856 Gene

SuperPathways for GC09P125856 Gene

No Data Available

Interacting Proteins for GC09P125856 Gene

Gene Ontology (GO) - Biological Process for GC09P125856 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P125856 Gene

Drugs & Compounds for GC09P125856 Gene

No Compound Related Data Available

Transcripts for GC09P125856 Gene

fRNAdb Secondary structures for GC09P125856 Gene

  • FR161913
  • FR341986
  • FR177410

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P125856 Gene

No ASD Table

Relevant External Links for GC09P125856 Gene

GeneLoc Exon Structure for
GC09P125856

No data available for mRNA/cDNA for GC09P125856 Gene

Expression for GC09P125856 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P125856 Gene

Orthologs for GC09P125856 Gene

No data available for Orthologs and Evolution for GC09P125856 Gene

Paralogs for GC09P125856 Gene

No data available for Paralogs for GC09P125856 Gene

Variants for GC09P125856 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P125856 Gene

Disorders for GC09P125856 Gene

No disorders were found for GC09P125856 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P125856 Gene

Publications for GC09P125856 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P125856 Gene

Sources for GC09P125856 Gene

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