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Aliases for GC09P125105 Gene

Subcategory (RNA class) for GC09P125105 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09P125105 Gene

No Aliases found

ORGUL Members for GC09P125105 Gene

No data available for External Ids for GC09P125105 Gene

Summaries for GC09P125105 Gene

GeneCards Summary for GC09P125105 Gene

GC09P125105 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09P125105 Gene - the ORGUL cluster for this gene includes several descriptions:

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

  • U2 spliceosomal RNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenosine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

View fRNAdb secondary structures for GC09P125105

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P125105 Gene

Genomics for GC09P125105 Gene

Regulatory Elements for GC09P125105 Gene

Enhancers for GC09P125105 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G125119 1.1 ENCODE dbSUPER 0.4 +16.0 16027 3.8 HDAC1 CTCF FOXA2 PKNOX1 SAP30 ZNF223 SIN3A ZIC2 RAD21 FOSL1 SCAI RABEPK PRPS1P2 GC09P125105
GH09G125124 1.4 Ensembl ENCODE dbSUPER 0.3 +21.2 21233 3.3 HDAC1 HDGF PKNOX1 SIN3A ZNF121 ZNF766 GLIS2 EGR1 FOS EGR2 RABEPK PRPS1P2 SCAI GC09P125105
GH09G125142 1.3 ENCODE dbSUPER 0.3 +37.8 37783 2.0 PKNOX1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 RABEPK SCAI GC09P125105
GH09G125136 1 ENCODE 0.3 +32.1 32084 1.2 ATF1 ARNT AGO1 SIN3A GLIS2 ZNF143 FOS ZNF263 SP3 MBD2 SCAI GC09P125105
GH09G125099 0.7 Ensembl 0.4 -5.9 -5931 0.2 SOX5 GATAD2A STAT1 FOXA2 SAP130 FOXA3 BACH1 HMG20A RARA TEAD3 GC09P125105 GC09M125042
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P125105 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P125105 Gene

Chromosome:
9
Start:
125,105,431 bp from pter
End:
125,105,617 bp from pter
Size:
187 bases
Orientation:
Plus strand

Genomic View for GC09P125105 Gene

Genes around GC09P125105 on UCSC Golden Path with GeneCards custom track

GC09P125105 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P125105 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P125105 Gene

ORGUL Member Location for GC09P125105 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P125105 Gene

Proteins for GC09P125105 Gene

Post-translational modifications for GC09P125105 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P125105 Gene

Domains & Families for GC09P125105 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P125105 Gene

Function for GC09P125105 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P125105 Gene

Localization for GC09P125105 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P125105 Gene

Pathways & Interactions for GC09P125105 Gene

SuperPathways for GC09P125105 Gene

No Data Available

Interacting Proteins for GC09P125105 Gene

Gene Ontology (GO) - Biological Process for GC09P125105 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P125105 Gene

Drugs & Compounds for GC09P125105 Gene

No Compound Related Data Available

Transcripts for GC09P125105 Gene

fRNAdb Secondary structures for GC09P125105 Gene

  • FR144458

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P125105 Gene

No ASD Table

Relevant External Links for GC09P125105 Gene

GeneLoc Exon Structure for
GC09P125105

No data available for mRNA/cDNA for GC09P125105 Gene

Expression for GC09P125105 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P125105 Gene

Orthologs for GC09P125105 Gene

No data available for Orthologs and Evolution for GC09P125105 Gene

Paralogs for GC09P125105 Gene

No data available for Paralogs for GC09P125105 Gene

Variants for GC09P125105 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P125105 Gene

Disorders for GC09P125105 Gene

No disorders were found for GC09P125105 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P125105 Gene

Publications for GC09P125105 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund J.A. … Schultz S.C. (RNA 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby M.I. … Greenbaum N.L. (RNA 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC09P125105 Gene

Sources for GC09P125105 Gene

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