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Aliases for GC09P124694 Gene

Subcategory (RNA class) for GC09P124694 Gene

miRNA

Quality Score for this RNA gene is

1.2

Aliases for GC09P124694 Gene

No Aliases found

ORGUL Members for GC09P124694 Gene

No data available for External Ids for GC09P124694 Gene

Summaries for GC09P124694 Gene

GeneCards Summary for GC09P124694 Gene

GC09P124694 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09P124694 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P124694

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P124694 Gene

Genomics for GC09P124694 Gene

Regulatory Elements for GC09P124694 Gene

Enhancers for GC09P124694 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G124694 1.1 Ensembl ENCODE 0.7 +3.3 3271 5.2 ELF3 FOXA2 MLX ARID4B THRB RARA TCF12 FOS EGR2 MXD4 ENSG00000231149 NR5A1 MIR181A2HG GC09P124694 ENSG00000236643
GH09G124711 1.2 Ensembl ENCODE 0.4 +18.4 18377 0.6 ELF3 HDGF TBL1XR1 RB1 ARNT WRNIP1 ARID4B BRCA1 THRB RAD21 NR6A1 ENSG00000236643 WDR38 RPL35 ARPC5L MIR181A2HG GC09P124694
GH09G124707 1 Ensembl ENCODE 0.4 +14.9 14921 2.1 TAL1 FOSL1 TCF12 GATA3 NCOR1 POLR2A SCRT2 FOS TRIM24 EGR2 MIR181A2HG GAPVD1 GC09P124694 ENSG00000236643
GH09G124720 1.2 Ensembl ENCODE 0.3 +27.5 27515 2.0 FOXA2 MLX ARID4B FEZF1 ZNF766 GATA2 ZNF263 SP5 PPARG GLIS1 MIR181A2 MIR181B2 ENSG00000236643 NR6A1 WDR38 ARPC5L RPL35 ENSG00000231149 NR5A1 GC09P124694
GH09G124733 1.2 Ensembl ENCODE 0.3 +40.8 40813 2.5 PKNOX1 FOXA2 MLX ARID4B ZNF48 FOS ZNF263 SP5 JUNB PPARG MIR181A2HG ENSG00000236643 GC09P124694
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P124694 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P124694 Gene

Chromosome:
9
Start:
124,693,724 bp from pter
End:
124,693,780 bp from pter
Size:
57 bases
Orientation:
Plus strand

Genomic View for GC09P124694 Gene

Genes around GC09P124694 on UCSC Golden Path with GeneCards custom track

GC09P124694 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P124694 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P124694 Gene

ORGUL Member Location for GC09P124694 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P124694 Gene

Proteins for GC09P124694 Gene

Post-translational modifications for GC09P124694 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P124694 Gene

Domains & Families for GC09P124694 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P124694 Gene

Function for GC09P124694 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P124694 Gene

Localization for GC09P124694 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P124694 Gene

Pathways & Interactions for GC09P124694 Gene

SuperPathways for GC09P124694 Gene

No Data Available

Interacting Proteins for GC09P124694 Gene

Gene Ontology (GO) - Biological Process for GC09P124694 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P124694 Gene

Drugs & Compounds for GC09P124694 Gene

No Compound Related Data Available

Transcripts for GC09P124694 Gene

fRNAdb Secondary structures for GC09P124694 Gene

  • FR402608
  • FR187057

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P124694 Gene

No ASD Table

Relevant External Links for GC09P124694 Gene

GeneLoc Exon Structure for
GC09P124694

No data available for mRNA/cDNA for GC09P124694 Gene

Expression for GC09P124694 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P124694 Gene

Orthologs for GC09P124694 Gene

No data available for Orthologs and Evolution for GC09P124694 Gene

Paralogs for GC09P124694 Gene

No data available for Paralogs for GC09P124694 Gene

Variants for GC09P124694 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P124694 Gene

Disorders for GC09P124694 Gene

No disorders were found for GC09P124694 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P124694 Gene

Publications for GC09P124694 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  4. Vertebrate microRNA genes. (PMID: 12624257) Lim L.P. … Bartel D.P. (Science 2003) 1
  5. Evolutionary biology. Small but mighty timekeepers. (PMID: 11081491) Adoutte A. (Nature 2000) 1

Products for GC09P124694 Gene

Sources for GC09P124694 Gene

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