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Aliases for GC09P124378 Gene

Subcategory (RNA class) for GC09P124378 Gene

undefined

Quality Score for this RNA gene is

0.4

Aliases for GC09P124378 Gene

No Aliases found

ORGUL Members for GC09P124378 Gene

No data available for External Ids for GC09P124378 Gene

Summaries for GC09P124378 Gene

GeneCards Summary for GC09P124378 Gene

GC09P124378 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P124378 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P124378

Additional gene information for GC09P124378 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P124378 Gene

Genomics for GC09P124378 Gene

Regulatory Elements for GC09P124378 Gene

Enhancers for GC09P124378 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H124385 2.3 Ensembl ENCODE 0.4 +8.4 8385 2 FOXA2 ATF1 MLX ARID4B FEZF1 DMAP1 YY1 FOS ATF7 MXD4 NEK6 PSMB7 ENSG00000231149 NR5A1 GC09P124378
GH09H124381 1.1 Ensembl ENCODE dbSUPER 0.7 +3.3 3327 0 MAX YY1 JUND ZNF316 POLR2A HNF4G HNF4A MYC GC09P124378 PSMB7
GH09H124390 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.0 14996 5 HDGF PKNOX1 FOXA2 ARNT SIN3A GATA2 FOS RUNX3 TSHZ1 SMARCA4 NEK6 PSMB7 NR5A1 ENSG00000231149 ENSG00000231227 LOC100505588 LHX2 DENND1A GC09P124378
GH09H124387 1.3 Ensembl ENCODE dbSUPER 0.4 +10.6 10558 1 HDAC1 HDGF PKNOX1 TBL1XR1 ARNT TCF12 ZNF766 GATA2 EGR2 ZBTB2 NEK6 ENSG00000231149 NR5A1 GC09P124378 PSMB7
GH09H124414 1.4 ENCODE dbSUPER 0.3 +36.7 36734 2 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 GAPVD1 GOLGA1 PRPS1P2 NEK6 PSMB7 GC09P124378
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P124378 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P124378 Gene

Chromosome:
9
Start:
124,378,333 bp from pter
End:
124,378,471 bp from pter
Size:
139 bases
Orientation:
Plus strand

Genomic View for GC09P124378 Gene

Genes around GC09P124378 on UCSC Golden Path with GeneCards custom track

GC09P124378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P124378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P124378 Gene

ORGUL Member Location for GC09P124378 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P124378 Gene

Proteins for GC09P124378 Gene

Post-translational modifications for GC09P124378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P124378 Gene

Domains & Families for GC09P124378 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P124378 Gene

Function for GC09P124378 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P124378 Gene

Localization for GC09P124378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P124378 Gene

Pathways & Interactions for GC09P124378 Gene

SuperPathways for GC09P124378 Gene

No Data Available

Interacting Proteins for GC09P124378 Gene

Gene Ontology (GO) - Biological Process for GC09P124378 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P124378 Gene

Drugs & Compounds for GC09P124378 Gene

No Compound Related Data Available

Transcripts for GC09P124378 Gene

fRNAdb Secondary structures for GC09P124378 Gene

  • FR095778
  • FR168967

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P124378 Gene

No ASD Table

Relevant External Links for GC09P124378 Gene

GeneLoc Exon Structure for
GC09P124378

No data available for mRNA/cDNA for GC09P124378 Gene

Expression for GC09P124378 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P124378 Gene

Orthologs for GC09P124378 Gene

No data available for Orthologs and Evolution for GC09P124378 Gene

Paralogs for GC09P124378 Gene

No data available for Paralogs for GC09P124378 Gene

Variants for GC09P124378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P124378 Gene

Disorders for GC09P124378 Gene

No disorders were found for GC09P124378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P124378 Gene

Publications for GC09P124378 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P124378 Gene

Sources for GC09P124378 Gene

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