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Aliases for GC09P123401 Gene

Subcategory (RNA class) for GC09P123401 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P123401 Gene

No Aliases found

ORGUL Members for GC09P123401 Gene

No data available for External Ids for GC09P123401 Gene

Summaries for GC09P123401 Gene

GeneCards Summary for GC09P123401 Gene

GC09P123401 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P123401 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P123401

Additional gene information for GC09P123401 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P123401 Gene

Genomics for GC09P123401 Gene

Regulatory Elements for GC09P123401 Gene

Enhancers for GC09P123401 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H123402 0.7 ENCODE 0.7 +0.9 886 0 SMARCA5 CTCF ZNF654 RB1 ZSCAN4 REST RAD21 TEAD3 SMC3 ZNF143 GC09P123401 GC09M123403
GH09H123355 1.5 Ensembl ENCODE dbSUPER 0.3 -42.7 -42711 6 HDGF ATF1 MLX ZFP64 ARID4B TCF12 GLIS2 CBX5 GATA2 ATF7 STRBP MIR601 DENND1A MIR600HG MIR600 CRB2 GC09P123401
GH09H123385 0.9 ENCODE 0.4 -15.7 -15675 0 HDGF TBP PKNOX1 ATF1 RB1 ZSCAN4 KLF17 GLI4 ZNF2 THRB OR1J4 ENSG00000233616 OR1J2 TLK1P1 GC09P123401 CRB2
GH09H123364 1.2 FANTOM5 ENCODE dbSUPER 0.3 -36.7 -36693 0 TFAP4 MAZ BHLHE40 ZNF398 HIC1 ZFHX2 JUND ZNF157 FOS EGR2 MIR601 DENND1A MIR600 MIR600HG STRBP CRB2 GC09P123401
GH09H123394 0.8 ENCODE 0.4 -5.7 -5686 1 NFIB ZIC2 ZKSCAN1 TCF12 ZFHX2 POLR2A NCOR1 EGR1 ZNF600 TRIM24 CRB2 DENND1A GC09P123401
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P123401 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P123401 Gene

Chromosome:
9
Start:
123,401,231 bp from pter
End:
123,401,337 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC09P123401 Gene

Genes around GC09P123401 on UCSC Golden Path with GeneCards custom track

GC09P123401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P123401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P123401 Gene

ORGUL Member Location for GC09P123401 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P123401 Gene

Proteins for GC09P123401 Gene

Post-translational modifications for GC09P123401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P123401 Gene

Domains & Families for GC09P123401 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P123401 Gene

Function for GC09P123401 Gene

Phenotypes From GWAS Catalog for GC09P123401 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P123401 Gene

Localization for GC09P123401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P123401 Gene

Pathways & Interactions for GC09P123401 Gene

SuperPathways for GC09P123401 Gene

No Data Available

Interacting Proteins for GC09P123401 Gene

Gene Ontology (GO) - Biological Process for GC09P123401 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P123401 Gene

Drugs & Compounds for GC09P123401 Gene

No Compound Related Data Available

Transcripts for GC09P123401 Gene

fRNAdb Secondary structures for GC09P123401 Gene

  • FR006702
  • FR137874

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P123401 Gene

No ASD Table

Relevant External Links for GC09P123401 Gene

GeneLoc Exon Structure for
GC09P123401

No data available for mRNA/cDNA for GC09P123401 Gene

Expression for GC09P123401 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P123401 Gene

Orthologs for GC09P123401 Gene

No data available for Orthologs and Evolution for GC09P123401 Gene

Paralogs for GC09P123401 Gene

No data available for Paralogs for GC09P123401 Gene

Variants for GC09P123401 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P123401 Gene

Disorders for GC09P123401 Gene

No disorders were found for GC09P123401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P123401 Gene

Publications for GC09P123401 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P123401 Gene

Sources for GC09P123401 Gene

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