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Aliases for GC09P114318 Gene

Subcategory (RNA class) for GC09P114318 Gene

miRNA

Quality Score for this RNA gene is

0.2

Aliases for GC09P114318 Gene

No Aliases found

ORGUL Members for GC09P114318 Gene

No data available for External Ids for GC09P114318 Gene

Summaries for GC09P114318 Gene

GeneCards Summary for GC09P114318 Gene

GC09P114318 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09P114318 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P114318

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P114318 Gene

Genomics for GC09P114318 Gene

Regulatory Elements for GC09P114318 Gene

Enhancers for GC09P114318 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G114206 1.1 Ensembl ENCODE dbSUPER 0.7 -2.0 -2023 1.7 ZFHX2 JUND ESRRA GLIS1 FOS NR2F2 EGR2 GC09P114317 GC09P114318 GC09P114397
GH09G114169 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -35.7 -35672 9.5 PKNOX1 MLX ARID4B DMAP1 YBX1 ZNF48 YY1 ZNF143 FOS SP5 COL27A1 MIR455 ORM1 GC09P114397 GC09P114317 GC09P114318
GH09G114180 1.1 Ensembl ENCODE dbSUPER 0.3 -28.0 -28049 2.4 ZBED1 BHLHE40 JUNB EED TCF7 HNF4G HNF4A ETV6 CREM COL27A1 MIR455 GC09P114397 GC09P114317 GC09P114318
GH09G114179 0.8 ENCODE dbSUPER 0.3 -30.3 -30256 0.1 HLF MAX HNF4A EP300 RAD21 MIR455 COL27A1 GC09P114397 GC09P114317 GC09P114318
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P114318 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P114318 Gene

Chromosome:
9
Start:
114,209,431 bp from pter
End:
114,209,534 bp from pter
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC09P114318 Gene

Genes around GC09P114318 on UCSC Golden Path with GeneCards custom track

GC09P114318 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P114318 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P114318 Gene

ORGUL Member Location for GC09P114318 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P114318 Gene

Proteins for GC09P114318 Gene

Post-translational modifications for GC09P114318 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P114318 Gene

Domains & Families for GC09P114318 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P114318 Gene

Function for GC09P114318 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P114318 Gene

Localization for GC09P114318 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P114318 Gene

Pathways & Interactions for GC09P114318 Gene

SuperPathways for GC09P114318 Gene

No Data Available

Interacting Proteins for GC09P114318 Gene

Gene Ontology (GO) - Biological Process for GC09P114318 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P114318 Gene

Drugs & Compounds for GC09P114318 Gene

No Compound Related Data Available

Transcripts for GC09P114318 Gene

fRNAdb Secondary structures for GC09P114318 Gene

  • FR040218
  • FR127304

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P114318 Gene

No ASD Table

Relevant External Links for GC09P114318 Gene

GeneLoc Exon Structure for
GC09P114318

No data available for mRNA/cDNA for GC09P114318 Gene

Expression for GC09P114318 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P114318 Gene

Orthologs for GC09P114318 Gene

No data available for Orthologs and Evolution for GC09P114318 Gene

Paralogs for GC09P114318 Gene

No data available for Paralogs for GC09P114318 Gene

Variants for GC09P114318 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P114318 Gene

Disorders for GC09P114318 Gene

No disorders were found for GC09P114318 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P114318 Gene

Publications for GC09P114318 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1
  3. Phylogenetic shadowing and computational identification of human microRNA genes. (PMID: 15652478) Berezikov E. … Cuppen E. (Cell 2005) 1

Products for GC09P114318 Gene

Sources for GC09P114318 Gene

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