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Aliases for GC09P113871 Gene

Subcategory (RNA class) for GC09P113871 Gene

lncRNA

Quality Score for this RNA gene is

0.2

Aliases for GC09P113871 Gene

No Aliases found

ORGUL Members for GC09P113871 Gene

No data available for External Ids for GC09P113871 Gene

Summaries for GC09P113871 Gene

GeneCards Summary for GC09P113871 Gene

GC09P113871 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC09P113871 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P113871

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P113871 Gene

Genomics for GC09P113871 Gene

Regulatory Elements for GC09P113871 Gene

Enhancers for GC09P113871 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G113540 1.1 ENCODE dbSUPER 0.7 -1.3 -1272 1.4 TBP ATF1 NFRKB ZNF766 FOS NFYA SMAD5 ZBTB11 NFYC ELF4 C9orf43 GC09P113871 RGS3
GH09G113516 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.2 -20248 11.1 HDGF PKNOX1 FOXA2 WRNIP1 SIN3A ZNF143 FOS REST TBX21 GLIS1 C9orf43 RGS3 ALAD RNF183 CDC26 PRPF4 SLC31A2 GC09P113871
GH09G113542 0.8 ENCODE dbSUPER 0.7 +0.8 812 2.0 PKNOX1 POLR2A SMARCA4 PBX2 IKZF1 CEBPG C9orf43 GC09P113871 GC09P113870
GH09G113546 1.4 Ensembl ENCODE dbSUPER 0.4 +5.8 5774 3.2 HDAC1 DMAP1 ZNF48 RAD21 RARA YY1 GATA2 CREM SP5 CEBPB C9orf43 RGS3 POLE3 ALAD GC09P113871 GC09P113870
GH09G113558 1.4 Ensembl ENCODE dbSUPER 0.4 +17.3 17342 2.5 HDGF SIN3A ARID4B DMAP1 ZNF48 YY1 TCF12 FOS SP5 MXD4 C9orf43 RGS3 RNF183 ALAD POLE3 CDC26 PRPF4 GC09P113870 GC09P113871
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P113871 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P113871 Gene

Chromosome:
9
Start:
113,542,453 bp from pter
End:
113,544,271 bp from pter
Size:
1,819 bases
Orientation:
Plus strand

Genomic View for GC09P113871 Gene

Genes around GC09P113871 on UCSC Golden Path with GeneCards custom track

GC09P113871 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P113871 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P113871 Gene

ORGUL Member Location for GC09P113871 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P113871 Gene

Proteins for GC09P113871 Gene

Post-translational modifications for GC09P113871 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P113871 Gene

Domains & Families for GC09P113871 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P113871 Gene

Function for GC09P113871 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P113871 Gene

Localization for GC09P113871 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P113871 Gene

Pathways & Interactions for GC09P113871 Gene

SuperPathways for GC09P113871 Gene

No Data Available

Interacting Proteins for GC09P113871 Gene

Gene Ontology (GO) - Biological Process for GC09P113871 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P113871 Gene

Drugs & Compounds for GC09P113871 Gene

No Compound Related Data Available

Transcripts for GC09P113871 Gene

fRNAdb Secondary structures for GC09P113871 Gene

  • FR146267

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P113871 Gene

No ASD Table

Relevant External Links for GC09P113871 Gene

GeneLoc Exon Structure for
GC09P113871

No data available for mRNA/cDNA for GC09P113871 Gene

Expression for GC09P113871 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P113871 Gene

Orthologs for GC09P113871 Gene

No data available for Orthologs and Evolution for GC09P113871 Gene

Paralogs for GC09P113871 Gene

No data available for Paralogs for GC09P113871 Gene

Variants for GC09P113871 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P113871 Gene

Disorders for GC09P113871 Gene

No disorders were found for GC09P113871 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P113871 Gene

Publications for GC09P113871 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for GC09P113871 Gene

Sources for GC09P113871 Gene

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