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Aliases for GC09P113870 Gene

Subcategory (RNA class) for GC09P113870 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P113870 Gene

No Aliases found

ORGUL Members for GC09P113870 Gene

No data available for External Ids for GC09P113870 Gene

Summaries for GC09P113870 Gene

GeneCards Summary for GC09P113870 Gene

GC09P113870 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P113870 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P113870

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P113870 Gene

Genomics for GC09P113870 Gene

Regulatory Elements for GC09P113870 Gene

Enhancers for GC09P113870 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G113567 1.1 Ensembl ENCODE dbSUPER 0.7 0.0 -37 1.9 NFIA ZNF366 ELF4 PRDM10 ETV6 ZBTB40 ZKSCAN1 C9orf43 RNF183 POLE3 CDC26 PRPF4 GC09P113870 GC09P113871
GH09G113563 1.1 ENCODE dbSUPER 0.7 -3.2 -3176 3.1 HDAC1 ATF1 PKNOX1 TBL1XR1 ARNT NFXL1 ZBTB40 RELB IKZF2 EGR2 C9orf43 RGS3 RNF183 POLE3 CDC26 PRPF4 ALAD GC09P113870 GC09P113871
GH09G113577 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.5 11543 6.3 HDGF PKNOX1 WRNIP1 SIN3A YY1 ZNF766 GATA2 ZNF143 ZNF207 FOS C9orf43 RGS3 POLE3 ALAD RNF183 GC09P113870 LOC105376221
GH09G113571 0.9 dbSUPER 0.7 +4.0 3954 1.4 HDAC1 HDGF PKNOX1 ATF1 KLF17 YBX1 GATA2 CREM ZBTB11 ZEB2 C9orf43 RGS3 POLE3 ALAD RNF183 GC09P113870 LOC105376221
GH09G113569 0.8 dbSUPER 0.7 +2.1 2143 2.0 BCOR BACH1 ZMYM3 ZKSCAN1 RARA FOSL1 ZNF664 GATA3 ZNF316 ZNF366 C9orf43 RGS3 ALAD RNF183 POLE3 CDC26 PRPF4 GC09P113870 LOC105376221
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P113870 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P113870 Gene

Chromosome:
9
Start:
113,568,681 bp from pter
End:
113,568,827 bp from pter
Size:
147 bases
Orientation:
Plus strand

Genomic View for GC09P113870 Gene

Genes around GC09P113870 on UCSC Golden Path with GeneCards custom track

GC09P113870 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P113870 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P113870 Gene

ORGUL Member Location for GC09P113870 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P113870 Gene

Proteins for GC09P113870 Gene

Post-translational modifications for GC09P113870 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P113870 Gene

Domains & Families for GC09P113870 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P113870 Gene

Function for GC09P113870 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P113870 Gene

Localization for GC09P113870 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P113870 Gene

Pathways & Interactions for GC09P113870 Gene

SuperPathways for GC09P113870 Gene

No Data Available

Interacting Proteins for GC09P113870 Gene

Gene Ontology (GO) - Biological Process for GC09P113870 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P113870 Gene

Drugs & Compounds for GC09P113870 Gene

No Compound Related Data Available

Transcripts for GC09P113870 Gene

fRNAdb Secondary structures for GC09P113870 Gene

  • FR211433
  • FR072474

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P113870 Gene

No ASD Table

Relevant External Links for GC09P113870 Gene

GeneLoc Exon Structure for
GC09P113870

No data available for mRNA/cDNA for GC09P113870 Gene

Expression for GC09P113870 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P113870 Gene

Orthologs for GC09P113870 Gene

No data available for Orthologs and Evolution for GC09P113870 Gene

Paralogs for GC09P113870 Gene

No data available for Paralogs for GC09P113870 Gene

Variants for GC09P113870 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P113870 Gene

Disorders for GC09P113870 Gene

No disorders were found for GC09P113870 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P113870 Gene

Publications for GC09P113870 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC09P113870 Gene

Sources for GC09P113870 Gene

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