Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC09P101627 Gene

Subcategory (RNA class) for GC09P101627 Gene

undefined

Quality Score for this RNA gene is

0.4

Aliases for GC09P101627 Gene

No Aliases found

ORGUL Members for GC09P101627 Gene

No data available for External Ids for GC09P101627 Gene

Summaries for GC09P101627 Gene

GeneCards Summary for GC09P101627 Gene

GC09P101627 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P101627 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P101627

Additional gene information for GC09P101627 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P101627 Gene

Genomics for GC09P101627 Gene

Regulatory Elements for GC09P101627 Gene

Enhancers for GC09P101627 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H101704 0.7 Ensembl ENCODE 0.2 +77.7 77677 0 CTCF RAD21 GRIN3A GC09P101627
GH09H101673 0.4 ENCODE 0.2 +46.2 46202 1 SPI1 GRIN3A PPP3R2 TMEM246-AS1 GC09P101627
GH09H101716 0.4 ENCODE 0.2 +89.2 89227 1 POLR2A GRIN3A TMEM246-AS1 GC09P101627
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P101627 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P101627 Gene

Chromosome:
9
Start:
101,627,673 bp from pter
End:
101,627,832 bp from pter
Size:
160 bases
Orientation:
Plus strand

Genomic View for GC09P101627 Gene

Genes around GC09P101627 on UCSC Golden Path with GeneCards custom track

GC09P101627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P101627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P101627 Gene

ORGUL Member Location for GC09P101627 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P101627 Gene

Proteins for GC09P101627 Gene

Post-translational modifications for GC09P101627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P101627 Gene

Domains & Families for GC09P101627 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P101627 Gene

Function for GC09P101627 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P101627 Gene

Localization for GC09P101627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P101627 Gene

Pathways & Interactions for GC09P101627 Gene

SuperPathways for GC09P101627 Gene

No Data Available

Interacting Proteins for GC09P101627 Gene

Gene Ontology (GO) - Biological Process for GC09P101627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P101627 Gene

Drugs & Compounds for GC09P101627 Gene

No Compound Related Data Available

Transcripts for GC09P101627 Gene

fRNAdb Secondary structures for GC09P101627 Gene

  • FR072114
  • FR095354

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P101627 Gene

No ASD Table

Relevant External Links for GC09P101627 Gene

GeneLoc Exon Structure for
GC09P101627

No data available for mRNA/cDNA for GC09P101627 Gene

Expression for GC09P101627 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P101627 Gene

Orthologs for GC09P101627 Gene

No data available for Orthologs and Evolution for GC09P101627 Gene

Paralogs for GC09P101627 Gene

No data available for Paralogs for GC09P101627 Gene

Variants for GC09P101627 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P101627 Gene

Disorders for GC09P101627 Gene

No disorders were found for GC09P101627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P101627 Gene

Publications for GC09P101627 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC09P101627 Gene

Sources for GC09P101627 Gene

Content
Loading form....