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Aliases for GC09P098033 Gene

Subcategory (RNA class) for GC09P098033 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09P098033 Gene

No Aliases found

ORGUL Members for GC09P098033 Gene

No data available for External Ids for GC09P098033 Gene

Summaries for GC09P098033 Gene

GeneCards Summary for GC09P098033 Gene

GC09P098033 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09P098033 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09P098033 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P098033 Gene

Genomics for GC09P098033 Gene

Regulatory Elements for GC09P098033 Gene

Enhancers for GC09P098033 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H098009 0.9 ENCODE dbSUPER 0.3 -21.9 -21909 1 MAX MNT NR2F2 POLR2A ZNF143 NBN FOS MYC SUPT5H ENSG00000236896 ANP32B HEMGN TBC1D2 TRIM14 GC09P098033
GH09H097990 0.9 ENCODE dbSUPER 0.3 -42.0 -41959 1 CTCF JUN ZBTB8A DPF2 RAD21 ZFP69B JUND PRDM6 ZNF692 GLIS1 NANS ENSG00000236896 GC09P098033
GH09H097992 0.7 Ensembl ENCODE 0.3 -38.9 -38945 0 HDGF ZNF121 PRDM6 ENSG00000236896 GC09P098033
GH09H097993 0.7 Ensembl dbSUPER 0.3 -39.9 -39929 0 HDGF NR2C1 ENSG00000236896 GC09P098033
GH09H098018 0.4 ENCODE 0.4 -12.5 -12470 1 POLR2A HMBOX1 NANS TRMO TRIM14 GC09P098033 ENSG00000236896
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P098033 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P098033 Gene

Chromosome:
9
Start:
98,032,229 bp from pter
End:
98,032,335 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC09P098033 Gene

Genes around GC09P098033 on UCSC Golden Path with GeneCards custom track

GC09P098033 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P098033 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P098033 Gene

Proteins for GC09P098033 Gene

Post-translational modifications for GC09P098033 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P098033 Gene

Domains & Families for GC09P098033 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P098033 Gene

Function for GC09P098033 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P098033 Gene

Localization for GC09P098033 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P098033 Gene

Pathways & Interactions for GC09P098033 Gene

SuperPathways for GC09P098033 Gene

No Data Available

Interacting Proteins for GC09P098033 Gene

Gene Ontology (GO) - Biological Process for GC09P098033 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P098033 Gene

Drugs & Compounds for GC09P098033 Gene

No Compound Related Data Available

Transcripts for GC09P098033 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P098033 Gene

No ASD Table

Relevant External Links for GC09P098033 Gene

GeneLoc Exon Structure for
GC09P098033

No data available for mRNA/cDNA for GC09P098033 Gene

Expression for GC09P098033 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P098033 Gene

Orthologs for GC09P098033 Gene

No data available for Orthologs and Evolution for GC09P098033 Gene

Paralogs for GC09P098033 Gene

No data available for Paralogs for GC09P098033 Gene

Variants for GC09P098033 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P098033 Gene

Disorders for GC09P098033 Gene

No disorders were found for GC09P098033 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P098033 Gene

Publications for GC09P098033 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09P098033 Gene

Sources for GC09P098033 Gene

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