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Aliases for GC09P095097 Gene

Subcategory (RNA class) for GC09P095097 Gene

miRNA

Quality Score for this RNA gene is

0.4

Aliases for GC09P095097 Gene

No Aliases found

ORGUL Members for GC09P095097 Gene

No data available for External Ids for GC09P095097 Gene

Summaries for GC09P095097 Gene

GeneCards Summary for GC09P095097 Gene

GC09P095097 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09P095097 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P095097

Additional gene information for GC09P095097 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P095097 Gene

Genomics for GC09P095097 Gene

Regulatory Elements for GC09P095097 Gene

Enhancers for GC09P095097 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H095076 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.9 -6873 3 GATA3 POLR2A HNF4A ATF7 ATF2 TCF7L2 FANCC PTCH1 GC09P095097 MIR6081
GH09H095070 1.1 ENCODE dbSUPER 0.4 -14.4 -14361 0 FOXA2 MLX ARID4B DMAP1 RAD21 SLC30A9 RCOR1 CEBPB PPARG KLF16 MIR6081 GC09P095097
GH09H095081 0.5 ENCODE dbSUPER 0.7 -3.2 -3171 0 GC09P095097 MIR6081
GH09H095074 0.7 ENCODE dbSUPER 0.4 -10.3 -10337 0 MAX HNF4A GABPA MIR6081 GC09P095097
GH09H095073 0.6 dbSUPER 0.4 -11.9 -11897 0 CTCF ZNF687 SMC3 MNT KLF4 RAD21 C9orf3 MIR6081 GC09P095097
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P095097 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P095097 Gene

Chromosome:
9
Start:
95,085,207 bp from pter
End:
95,085,311 bp from pter
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC09P095097 Gene

Genes around GC09P095097 on UCSC Golden Path with GeneCards custom track

GC09P095097 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P095097 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P095097 Gene

ORGUL Member Location for GC09P095097 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P095097 Gene

Proteins for GC09P095097 Gene

Post-translational modifications for GC09P095097 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P095097 Gene

Domains & Families for GC09P095097 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P095097 Gene

Function for GC09P095097 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P095097 Gene

Localization for GC09P095097 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P095097 Gene

Pathways & Interactions for GC09P095097 Gene

SuperPathways for GC09P095097 Gene

No Data Available

Interacting Proteins for GC09P095097 Gene

Gene Ontology (GO) - Biological Process for GC09P095097 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P095097 Gene

Drugs & Compounds for GC09P095097 Gene

No Compound Related Data Available

Transcripts for GC09P095097 Gene

fRNAdb Secondary structures for GC09P095097 Gene

  • FR299945
  • FR149352
  • FR287380

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P095097 Gene

No ASD Table

Relevant External Links for GC09P095097 Gene

GeneLoc Exon Structure for
GC09P095097

No data available for mRNA/cDNA for GC09P095097 Gene

Expression for GC09P095097 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P095097 Gene

Orthologs for GC09P095097 Gene

No data available for Orthologs and Evolution for GC09P095097 Gene

Paralogs for GC09P095097 Gene

No data available for Paralogs for GC09P095097 Gene

Variants for GC09P095097 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P095097 Gene

Disorders for GC09P095097 Gene

No disorders were found for GC09P095097 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P095097 Gene

Publications for GC09P095097 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  4. Phylogenetic shadowing and computational identification of human microRNA genes. (PMID: 15652478) Berezikov E … Cuppen E (Cell 2005) 1
  5. Identification of tissue-specific microRNAs from mouse. (PMID: 12007417) Lagos-Quintana M … Tuschl T (Current biology : CB 2002) 1

Products for GC09P095097 Gene

Sources for GC09P095097 Gene

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