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Aliases for GC09P093405 Gene

Subcategory (RNA class) for GC09P093405 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09P093405 Gene

No Aliases found

ORGUL Members for GC09P093405 Gene

No data available for External Ids for GC09P093405 Gene

Summaries for GC09P093405 Gene

GeneCards Summary for GC09P093405 Gene

GC09P093405 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09P093405 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P093405 Gene

Genomics for GC09P093405 Gene

Regulatory Elements for GC09P093405 Gene

Enhancers for GC09P093405 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G093354 0.7 ENCODE 0.3 -20.9 -20911 0.6 GATAD2A SOX5 ELF3 SOX13 TEAD1 NFIA ARID4B CEBPB NR3C1 ZNF644 RNU6-829P C9orf129 WNK2 GC09P093405
GH09G093364 0.5 ENCODE 0.4 -10.4 -10406 1.6 PAF1 POLR2A ATF2 SPI1 PHF2 ENSG00000203364 WNK2 FGD3 GC09P093405 C9orf129
GH09G093366 0.4 ENCODE 0.4 -9.0 -9022 0.0 POLR2A GC09P093405 C9orf129
GH09G093345 0.5 ENCODE 0.3 -28.9 -28945 1.8 POLR2A SMARCA4 ZNF133 RBBP5 EZH2 C9orf129 ENSG00000203364 ENSG00000227603 GC09P093405
GH09G093347 0.4 ENCODE 0.3 -27.8 -27782 0.2 ZNF133 C9orf129 GC09P093405
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P093405 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P093405 Gene

Chromosome:
9
Start:
93,375,555 bp from pter
End:
93,375,667 bp from pter
Size:
113 bases
Orientation:
Plus strand

Genomic View for GC09P093405 Gene

Genes around GC09P093405 on UCSC Golden Path with GeneCards custom track

GC09P093405 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P093405 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P093405 Gene

Proteins for GC09P093405 Gene

Post-translational modifications for GC09P093405 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P093405 Gene

Domains & Families for GC09P093405 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P093405 Gene

Function for GC09P093405 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P093405 Gene

Localization for GC09P093405 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P093405 Gene

Pathways & Interactions for GC09P093405 Gene

SuperPathways for GC09P093405 Gene

No Data Available

Interacting Proteins for GC09P093405 Gene

Gene Ontology (GO) - Biological Process for GC09P093405 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P093405 Gene

Drugs & Compounds for GC09P093405 Gene

No Compound Related Data Available

Transcripts for GC09P093405 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P093405 Gene

No ASD Table

Relevant External Links for GC09P093405 Gene

GeneLoc Exon Structure for
GC09P093405

No data available for mRNA/cDNA for GC09P093405 Gene

Expression for GC09P093405 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P093405 Gene

Orthologs for GC09P093405 Gene

No data available for Orthologs and Evolution for GC09P093405 Gene

Paralogs for GC09P093405 Gene

No data available for Paralogs for GC09P093405 Gene

Variants for GC09P093405 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P093405 Gene

Disorders for GC09P093405 Gene

No disorders were found for GC09P093405 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P093405 Gene

Publications for GC09P093405 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC09P093405 Gene

Sources for GC09P093405 Gene

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