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Aliases for GC09P087261 Gene

Subcategory (RNA class) for GC09P087261 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC09P087261 Gene

No Aliases found

ORGUL Members for GC09P087261 Gene

No data available for External Ids for GC09P087261 Gene

Summaries for GC09P087261 Gene

GeneCards Summary for GC09P087261 Gene

GC09P087261 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09P087261 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC09P087261 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P087261 Gene

Genomics for GC09P087261 Gene

Regulatory Elements for GC09P087261 Gene

Enhancers for GC09P087261 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H087259 0.9 ENCODE dbSUPER 0.7 -0.6 -608 1 PKNOX1 JUNB EBF1 BATF POLR2A IKZF1 GLIS1 IKZF2 PRDM4 TRIM28 C9orf170 GC09P087261
GH09H087254 0.7 ENCODE dbSUPER 0.7 -4.6 -4562 1 POLR2A ZNF24 GC09P087261 C9orf170
GH09H087238 0.7 ENCODE dbSUPER 0.3 -21.5 -21511 1 ZNF133 GFI1B ENSG00000212421 GC09P087261 C9orf170
GH09H087249 0.5 ENCODE 0.4 -11.2 -11229 0 NFIC LCORL NFIB GC09P087261 C9orf170
GH09H087233 0.6 ENCODE dbSUPER 0.3 -26.4 -26407 1 PRDM10 ENSG00000212421 GC09P087261 C9orf170
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P087261 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P087261 Gene

Chromosome:
9
Start:
87,260,449 bp from pter
End:
87,260,585 bp from pter
Size:
137 bases
Orientation:
Plus strand

Genomic View for GC09P087261 Gene

Genes around GC09P087261 on UCSC Golden Path with GeneCards custom track

GC09P087261 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P087261 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P087261 Gene

Proteins for GC09P087261 Gene

Post-translational modifications for GC09P087261 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P087261 Gene

Domains & Families for GC09P087261 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P087261 Gene

Function for GC09P087261 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P087261 Gene

Localization for GC09P087261 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P087261 Gene

Pathways & Interactions for GC09P087261 Gene

SuperPathways for GC09P087261 Gene

No Data Available

Interacting Proteins for GC09P087261 Gene

Gene Ontology (GO) - Biological Process for GC09P087261 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P087261 Gene

Drugs & Compounds for GC09P087261 Gene

No Compound Related Data Available

Transcripts for GC09P087261 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P087261 Gene

No ASD Table

Relevant External Links for GC09P087261 Gene

GeneLoc Exon Structure for
GC09P087261

No data available for mRNA/cDNA for GC09P087261 Gene

Expression for GC09P087261 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P087261 Gene

Orthologs for GC09P087261 Gene

No data available for Orthologs and Evolution for GC09P087261 Gene

Paralogs for GC09P087261 Gene

No data available for Paralogs for GC09P087261 Gene

Variants for GC09P087261 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P087261 Gene

Disorders for GC09P087261 Gene

No disorders were found for GC09P087261 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P087261 Gene

Publications for GC09P087261 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1

Products for GC09P087261 Gene

Sources for GC09P087261 Gene

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