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Aliases for GC09P079662 Gene

Subcategory (RNA class) for GC09P079662 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P079662 Gene

No Aliases found

ORGUL Members for GC09P079662 Gene

No data available for External Ids for GC09P079662 Gene

Summaries for GC09P079662 Gene

GeneCards Summary for GC09P079662 Gene

GC09P079662 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P079662 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P079662

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P079662 Gene

Genomics for GC09P079662 Gene

Regulatory Elements for GC09P079662 Gene

Enhancers for GC09P079662 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G079659 1.7 VISTA Ensembl ENCODE dbSUPER 0.7 -0.6 -619 5.2 MXI1 RAD21 GATA3 SCRT2 PRDM10 TCF7L2 EZH2 SCRT1 RFX1 EP300 TLE4 GC09P079662 GC09P079610
GH09G079650 2.4 VISTA Ensembl ENCODE dbSUPER 0.4 -11.0 -10987 1.2 CTCF PKNOX1 MXI1 MAX EP300 PRDM6 CTBP1 MYC TRIM28 TLE4 GC09P079662 GC09P079610
GH09G079609 3.2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.2 -51.6 -51563 3.6 SIN3A FEZF1 BRCA1 RAD21 ETV6 IKZF2 CREM EGR2 CEBPB JUNB TLE4 GC09P079610 GC09P079662
GH09G079629 2 VISTA ENCODE 0.3 -31.7 -31683 2.0 TBL1XR1 BACH1 BMI1 RELA ARID3A EED RELB IKZF2 MTA2 BHLHE40 TLE4 GC09P079610 GC09P079662
GH09G079623 1.4 Ensembl ENCODE dbSUPER 0.3 -38.2 -38174 1.3 HDGF PKNOX1 WRNIP1 ZBTB40 EGR1 CBX5 FOS RELB ETV6 IKZF2 TLE4 GC09P079610 GC09P079662
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P079662 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P079662 Gene

Chromosome:
9
Start:
79,662,547 bp from pter
End:
79,662,824 bp from pter
Size:
278 bases
Orientation:
Plus strand

Genomic View for GC09P079662 Gene

Genes around GC09P079662 on UCSC Golden Path with GeneCards custom track

GC09P079662 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P079662 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P079662 Gene

ORGUL Member Location for GC09P079662 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P079662 Gene

Proteins for GC09P079662 Gene

Post-translational modifications for GC09P079662 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P079662 Gene

Domains & Families for GC09P079662 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P079662 Gene

Function for GC09P079662 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P079662 Gene

Localization for GC09P079662 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P079662 Gene

Pathways & Interactions for GC09P079662 Gene

SuperPathways for GC09P079662 Gene

No Data Available

Interacting Proteins for GC09P079662 Gene

Gene Ontology (GO) - Biological Process for GC09P079662 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P079662 Gene

Drugs & Compounds for GC09P079662 Gene

No Compound Related Data Available

Transcripts for GC09P079662 Gene

fRNAdb Secondary structures for GC09P079662 Gene

  • FR268024
  • FR170661

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P079662 Gene

No ASD Table

Relevant External Links for GC09P079662 Gene

GeneLoc Exon Structure for
GC09P079662

No data available for mRNA/cDNA for GC09P079662 Gene

Expression for GC09P079662 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P079662 Gene

Orthologs for GC09P079662 Gene

No data available for Orthologs and Evolution for GC09P079662 Gene

Paralogs for GC09P079662 Gene

No data available for Paralogs for GC09P079662 Gene

Variants for GC09P079662 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P079662 Gene

Disorders for GC09P079662 Gene

No disorders were found for GC09P079662 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P079662 Gene

Publications for GC09P079662 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC09P079662 Gene

Sources for GC09P079662 Gene

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