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Aliases for GC09P004850 Gene

Subcategory (RNA class) for GC09P004850 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC09P004850 Gene

No Aliases found

ORGUL Members for GC09P004850 Gene

No data available for External Ids for GC09P004850 Gene

Summaries for GC09P004850 Gene

GeneCards Summary for GC09P004850 Gene

GC09P004850 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC09P004850 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09P004850

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P004850 Gene

Genomics for GC09P004850 Gene

Regulatory Elements for GC09P004850 Gene

Enhancers for GC09P004850 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G004848 1.3 Ensembl ENCODE dbSUPER 0.7 0.0 -31 2.7 ELF3 FOXA2 RAD21 YY1 RARA MIXL1 ZBTB11 REST NR2F2 ZNF592 JAK2 RCL1 GC09P004850 KLF4P1
GH09G004828 1.5 Ensembl ENCODE dbSUPER 0.4 -18.4 -18369 6.6 FOXA2 PKNOX1 ATF1 CREB3L1 ARNT SIN3A TCF12 GATA2 FOS JUNB RCL1 JAK2 GC09P004850 KLF4P1
GH09G004837 1.1 Ensembl ENCODE dbSUPER 0.4 -12.3 -12271 1.8 GATAD2A SOX13 TEAD1 PPARG ZIC2 RARA TEAD3 CEBPA U2AF1 SMAD4 RCL1 GC09P004850 KLF4P1
GH09G004839 1 ENCODE 0.4 -10.6 -10642 0.2 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 TCF12 SLC30A9 SP5 GC09P004850 KLF4P1
GH09G004815 1 Ensembl ENCODE 0.3 -34.7 -34721 0.9 TBL1XR1 EBF1 RELA ARID3A CBX5 POLR2A EED ETV6 RELB ZSCAN29 RCL1 ENSG00000228165 MIR101-2 JAK2 KLF4P1 GC09P004850
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P004850 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P004850 Gene

Chromosome:
9
Start:
4,850,277 bp from pter
End:
4,850,383 bp from pter
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC09P004850 Gene

Genes around GC09P004850 on UCSC Golden Path with GeneCards custom track

GC09P004850 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P004850 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P004850 Gene

ORGUL Member Location for GC09P004850 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P004850 Gene

Proteins for GC09P004850 Gene

Post-translational modifications for GC09P004850 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P004850 Gene

Domains & Families for GC09P004850 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P004850 Gene

Function for GC09P004850 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P004850 Gene

Localization for GC09P004850 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09P004850 Gene

Pathways & Interactions for GC09P004850 Gene

SuperPathways for GC09P004850 Gene

No Data Available

Interacting Proteins for GC09P004850 Gene

Gene Ontology (GO) - Biological Process for GC09P004850 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P004850 Gene

Drugs & Compounds for GC09P004850 Gene

No Compound Related Data Available

Transcripts for GC09P004850 Gene

fRNAdb Secondary structures for GC09P004850 Gene

  • FR375846
  • FR280725

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P004850 Gene

No ASD Table

Relevant External Links for GC09P004850 Gene

GeneLoc Exon Structure for
GC09P004850

No data available for mRNA/cDNA for GC09P004850 Gene

Expression for GC09P004850 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P004850 Gene

Orthologs for GC09P004850 Gene

No data available for Orthologs and Evolution for GC09P004850 Gene

Paralogs for GC09P004850 Gene

No data available for Paralogs for GC09P004850 Gene

Variants for GC09P004850 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P004850 Gene

Disorders for GC09P004850 Gene

No disorders were found for GC09P004850 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P004850 Gene

Publications for GC09P004850 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC09P004850 Gene

Sources for GC09P004850 Gene

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