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Aliases for GC09P000245 Gene

Subcategory (RNA class) for GC09P000245 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC09P000245 Gene

No Aliases found

No data available for External Ids for GC09P000245 Gene

Summaries for GC09P000245 Gene

GeneCards Summary for GC09P000245 Gene

GC09P000245 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC09P000245 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC09P000245

Additional gene information for GC09P000245 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09P000245 Gene

Genomics for GC09P000245 Gene

Regulatory Elements for GC09P000245 Gene

Enhancers for GC09P000245 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H000249 0.8 ENCODE dbSUPER 0.7 +3.8 3819 0 NFIC CTBP1 ATF1 ZEB2 DOCK8 C9orf66 GC09P000245 ENSG00000235880
GH09H000251 0.6 ENCODE dbSUPER 0.7 +4.9 4879 0 NR2F2 C9orf66 DOCK8 GC09P000245 ENSG00000235880
GH09H000268 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.7 23682 1 ZNF740 MAFG ZNF140 ZNF589 ZNF316 ID3 NFE2 EMSY CBWD1 DOCK8 WASHC1 RPL12P25 C9orf66 KANK1 ENSG00000235880 GC09P000245
GH09H000257 1 Ensembl ENCODE dbSUPER 0.4 +12.7 12684 1 TAL1 CEBPB MAX ZBTB33 MYC ENSG00000235880 CBWD1 DOCK8 C9orf66 GC09P000245
GH09H000259 1 ENCODE dbSUPER 0.4 +14.6 14631 1 HDAC1 LEF1 TAL1 TCF12 POLR2A GATA2 NCOR1 SMARCE1 SOX6 MTA2 ENSG00000235880 CBWD1 C9orf66 DOCK8 GC09P000245
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09P000245 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09P000245 Gene

Chromosome:
9
Start:
245,417 bp from pter
End:
245,450 bp from pter
Size:
34 bases
Orientation:
Plus strand

Genomic View for GC09P000245 Gene

Genes around GC09P000245 on UCSC Golden Path with GeneCards custom track

GC09P000245 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09P000245 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09P000245 Gene

ORGUL Member Location for GC09P000245 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09P000245 Gene

Proteins for GC09P000245 Gene

Post-translational modifications for GC09P000245 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09P000245 Gene

Domains & Families for GC09P000245 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09P000245 Gene

Function for GC09P000245 Gene

Phenotypes From GWAS Catalog for GC09P000245 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09P000245 Gene

Localization for GC09P000245 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09P000245 Gene

Pathways & Interactions for GC09P000245 Gene

SuperPathways for GC09P000245 Gene

No Data Available

Interacting Proteins for GC09P000245 Gene

Gene Ontology (GO) - Biological Process for GC09P000245 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09P000245 Gene

Drugs & Compounds for GC09P000245 Gene

No Compound Related Data Available

Transcripts for GC09P000245 Gene

fRNAdb Secondary structures for GC09P000245 Gene

  • FR304775
  • FR050780
  • FR316975

Alternative Splicing Database (ASD) splice patterns (SP) for GC09P000245 Gene

No ASD Table

Relevant External Links for GC09P000245 Gene

GeneLoc Exon Structure for
GC09P000245

No data available for mRNA/cDNA for GC09P000245 Gene

Expression for GC09P000245 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09P000245 Gene

Orthologs for GC09P000245 Gene

No data available for Orthologs and Evolution for GC09P000245 Gene

Paralogs for GC09P000245 Gene

No data available for Paralogs for GC09P000245 Gene

Variants for GC09P000245 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09P000245 Gene

Disorders for GC09P000245 Gene

No disorders were found for GC09P000245 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09P000245 Gene

Publications for GC09P000245 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC09P000245 Gene

Sources for GC09P000245 Gene

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