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Aliases for GC09M136749 Gene

Subcategory (RNA class) for GC09M136749 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC09M136749 Gene

No Aliases found

ORGUL Members for GC09M136749 Gene

No data available for External Ids for GC09M136749 Gene

Summaries for GC09M136749 Gene

GeneCards Summary for GC09M136749 Gene

GC09M136749 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09M136749 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M136749 Gene

Genomics for GC09M136749 Gene

Regulatory Elements for GC09M136749 Gene

Enhancers for GC09M136749 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G136722 0.8 ENCODE 0.7 +3.3 3262 0.0 HNRNPUL1 KLF1 AGO1 CHD7 BCL11B ZFHX2 GLIS2 POLR2A ZNF600 KLF8 GC09M136749 SNORA17B FAM69B
GH09G136724 0.8 ENCODE 0.7 +3.2 3176 0.1 HNRNPUL1 KLF1 AGO1 CHD7 ZIC2 BCL11B ZFHX2 GLIS2 POLR2A ZNF600 GC09M136749 SNORA17B FAM69B
GH09G136726 0.8 ENCODE 0.7 +2.9 2906 0.1 KLF1 FUS AGO1 CHD7 ZIC2 ZNF2 HIC1 ZFHX2 GLIS2 POLR2A GC09M136749 SNORA17B FAM69B
GH09G136723 0.7 ENCODE 0.7 +2.8 2816 0.0 FUS AGO1 ZNF2 HIC1 ZFHX2 POLR2A SCRT2 ZNF263 TAF15 ZBTB8A GC09M136749 SNORA17B FAM69B
GH09G136713 1.1 FANTOM5 ENCODE 0.4 +11.8 11799 3.6 AGO1 SREBF2 RARA ZNF121 ZNF766 GLIS2 GATA2 KLF7 ZNF263 NR2F2 EGFL7 LCN8 FAM69B NPDC1 INPP5E SNAPC4 SNORA17B GC09M136749
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M136749 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M136749 Gene

Chromosome:
9
Start:
136,726,103 bp from pter
End:
136,726,239 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for GC09M136749 Gene

Genes around GC09M136749 on UCSC Golden Path with GeneCards custom track

GC09M136749 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M136749 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M136749 Gene

Proteins for GC09M136749 Gene

Post-translational modifications for GC09M136749 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M136749 Gene

Domains & Families for GC09M136749 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M136749 Gene

Function for GC09M136749 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M136749 Gene

Localization for GC09M136749 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M136749 Gene

Pathways & Interactions for GC09M136749 Gene

SuperPathways for GC09M136749 Gene

No Data Available

Interacting Proteins for GC09M136749 Gene

Gene Ontology (GO) - Biological Process for GC09M136749 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M136749 Gene

Drugs & Compounds for GC09M136749 Gene

No Compound Related Data Available

Transcripts for GC09M136749 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M136749 Gene

No ASD Table

Relevant External Links for GC09M136749 Gene

GeneLoc Exon Structure for
GC09M136749

No data available for mRNA/cDNA for GC09M136749 Gene

Expression for GC09M136749 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M136749 Gene

Orthologs for GC09M136749 Gene

No data available for Orthologs and Evolution for GC09M136749 Gene

Paralogs for GC09M136749 Gene

No data available for Paralogs for GC09M136749 Gene

Variants for GC09M136749 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M136749 Gene

Disorders for GC09M136749 Gene

No disorders were found for GC09M136749 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M136749 Gene

Publications for GC09M136749 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 1

Products for GC09M136749 Gene

Sources for GC09M136749 Gene

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