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Aliases for GC09M134165 Gene

Subcategory (RNA class) for GC09M134165 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M134165 Gene

No Aliases found

No data available for External Ids for GC09M134165 Gene

Summaries for GC09M134165 Gene

GeneCards Summary for GC09M134165 Gene

GC09M134165 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M134165 Gene

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

View fRNAdb secondary structures for GC09M134165

Additional gene information for GC09M134165 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M134165 Gene

Genomics for GC09M134165 Gene

Regulatory Elements for GC09M134165 Gene

Enhancers for GC09M134165 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H134162 1.2 ENCODE 0.7 +0.1 79 3 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 WDR5 BRD3 LOC100130548 REXO4 RPL7A SURF6 ENSG00000273249 MED22 COL5A1-AS1 ENSG00000273473
GH09H134134 1.1 ENCODE 0.3 +28.5 28477 4 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ZNF207 DEK WDR5 SARDH ENSG00000273249 RNU6ATAC GC09M134165
GH09H134138 0.5 ENCODE 0.3 +25.4 25389 1 SCRT1 SCRT2 CEBPB HNF4A ZIC2 WDR5 ENSG00000273249 RNU6ATAC GC09M134165
GH09H134144 0.2 ENCODE 0.4 +19.5 19513 1 WDR5 ENSG00000273473 ENSG00000273249 GC09M134165 RNU6ATAC
GH09H134140 0.2 ENCODE 0.3 +24.3 24342 0 ENSG00000273249 RNU6ATAC GC09M134165
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M134165 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M134165 Gene

Chromosome:
9
Start:
134,164,438 bp from pter
End:
134,164,564 bp from pter
Size:
127 bases
Orientation:
Minus strand

Genomic View for GC09M134165 Gene

Genes around GC09M134165 on UCSC Golden Path with GeneCards custom track

GC09M134165 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M134165 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09M134165 Gene

ORGUL Member Location for GC09M134165 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M134165 Gene

Proteins for GC09M134165 Gene

Post-translational modifications for GC09M134165 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M134165 Gene

Domains & Families for GC09M134165 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M134165 Gene

Function for GC09M134165 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M134165 Gene

Localization for GC09M134165 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M134165 Gene

Pathways & Interactions for GC09M134165 Gene

SuperPathways for GC09M134165 Gene

No Data Available

Interacting Proteins for GC09M134165 Gene

Gene Ontology (GO) - Biological Process for GC09M134165 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M134165 Gene

Drugs & Compounds for GC09M134165 Gene

No Compound Related Data Available

Transcripts for GC09M134165 Gene

fRNAdb Secondary structures for GC09M134165 Gene

  • FR406145
  • FR178216

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M134165 Gene

No ASD Table

Relevant External Links for GC09M134165 Gene

GeneLoc Exon Structure for
GC09M134165

No data available for mRNA/cDNA for GC09M134165 Gene

Expression for GC09M134165 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M134165 Gene

Orthologs for GC09M134165 Gene

No data available for Orthologs and Evolution for GC09M134165 Gene

Paralogs for GC09M134165 Gene

No data available for Paralogs for GC09M134165 Gene

Variants for GC09M134165 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M134165 Gene

Disorders for GC09M134165 Gene

No disorders were found for GC09M134165 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M134165 Gene

Publications for GC09M134165 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  4. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1
  5. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1

Products for GC09M134165 Gene

Sources for GC09M134165 Gene

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