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Aliases for GC09M128394 Gene

Subcategory (RNA class) for GC09M128394 Gene

miRNA

Quality Score for this RNA gene is

7.2

Aliases for GC09M128394 Gene

No Aliases found

No data available for External Ids for GC09M128394 Gene

Summaries for GC09M128394 Gene

GeneCards Summary for GC09M128394 Gene

GC09M128394 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC09M128394 Gene - the ORGUL cluster for this gene includes several descriptions:

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC09M128394

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M128394 Gene

Genomics for GC09M128394 Gene

Regulatory Elements for GC09M128394 Gene

Enhancers for GC09M128394 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G128396 0.8 Ensembl dbSUPER 0.7 -4.6 -4557 0.8 MCM7 SUZ12 POLR2A CBX2 KDM1A EZH2 ZKSCAN1 CERCAM GC09M128394 MIR219A2
GH09G128398 0.8 ENCODE dbSUPER 0.7 -0.7 -673 0.1 POLR2A SUZ12 TEAD4 EZH2 GC09M128394 MIR219A2 CERCAM
GH09G128393 0.6 dbSUPER 0.7 -1.9 -1873 1.8 SUZ12 ZBTB8A REST ZNF579 GLIS1 KDM1A FOXP2 FOS EZH2 DNM1 GC09M128394 MIR219A2 CERCAM
GH09G128406 0.9 ENCODE dbSUPER 0.4 -14.3 -14343 0.2 TFAP4 FOXA2 RCOR2 TEAD4 ZMYM3 KDM1A PPARG TEAD3 CERCAM GC09M128394 MIR219A2
GH09G128395 0.5 dbSUPER 0.7 -0.2 -167 0.2 CBX8 SUZ12 POLR2A CBX2 EZH2 GC09M128394 MIR219A2 CERCAM
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M128394 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M128394 Gene

Chromosome:
9
Start:
128,392,617 bp from pter
End:
128,392,714 bp from pter
Size:
98 bases
Orientation:
Minus strand

Genomic View for GC09M128394 Gene

Genes around GC09M128394 on UCSC Golden Path with GeneCards custom track

GC09M128394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M128394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09M128394 Gene

ORGUL Member Location for GC09M128394 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M128394 Gene

Proteins for GC09M128394 Gene

Post-translational modifications for GC09M128394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M128394 Gene

Domains & Families for GC09M128394 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M128394 Gene

Function for GC09M128394 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M128394 Gene

Localization for GC09M128394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M128394 Gene

Pathways & Interactions for GC09M128394 Gene

SuperPathways for GC09M128394 Gene

No Data Available

Interacting Proteins for GC09M128394 Gene

Gene Ontology (GO) - Biological Process for GC09M128394 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M128394 Gene

Drugs & Compounds for GC09M128394 Gene

No Compound Related Data Available

Transcripts for GC09M128394 Gene

fRNAdb Secondary structures for GC09M128394 Gene

  • FR143620
  • FR138781
  • FR282263

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M128394 Gene

No ASD Table

Relevant External Links for GC09M128394 Gene

GeneLoc Exon Structure for
GC09M128394

No data available for mRNA/cDNA for GC09M128394 Gene

Expression for GC09M128394 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M128394 Gene

Orthologs for GC09M128394 Gene

No data available for Orthologs and Evolution for GC09M128394 Gene

Paralogs for GC09M128394 Gene

No data available for Paralogs for GC09M128394 Gene

Variants for GC09M128394 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M128394 Gene

Disorders for GC09M128394 Gene

No disorders were found for GC09M128394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M128394 Gene

Publications for GC09M128394 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. New human and mouse microRNA genes found by homology search. (PMID: 15634332) Weber M.J. (FEBS J. 2005) 1
  4. Vertebrate microRNA genes. (PMID: 12624257) Lim L.P. … Bartel D.P. (Science 2003) 1
  5. Computational identification of Drosophila microRNA genes. (PMID: 12844358) Lai E.C. … Rubin G.M. (Genome Biol. 2003) 1

Products for GC09M128394 Gene

Sources for GC09M128394 Gene

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