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Aliases for GC09M127449 Gene

Subcategory (RNA class) for GC09M127449 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC09M127449 Gene

No Aliases found

ORGUL Members for GC09M127449 Gene

No data available for External Ids for GC09M127449 Gene

Summaries for GC09M127449 Gene

GeneCards Summary for GC09M127449 Gene

GC09M127449 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09M127449 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC09M127449

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M127449 Gene

Genomics for GC09M127449 Gene

Regulatory Elements for GC09M127449 Gene

Enhancers for GC09M127449 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G127448 1.2 ENCODE 0.7 -0.9 -894 7.5 MLX CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC RPL12 SNORA65 SLC2A8 NAIF1 LOC102723566 ZNF79 ANGPTL2 URM1 FAM129B GC09M127449
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M127449 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M127449 Gene

Chromosome:
9
Start:
127,448,500 bp from pter
End:
127,448,637 bp from pter
Size:
138 bases
Orientation:
Minus strand

Genomic View for GC09M127449 Gene

Genes around GC09M127449 on UCSC Golden Path with GeneCards custom track

GC09M127449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M127449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09M127449 Gene

ORGUL Member Location for GC09M127449 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M127449 Gene

Proteins for GC09M127449 Gene

Post-translational modifications for GC09M127449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M127449 Gene

Domains & Families for GC09M127449 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M127449 Gene

Function for GC09M127449 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M127449 Gene

Localization for GC09M127449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M127449 Gene

Pathways & Interactions for GC09M127449 Gene

SuperPathways for GC09M127449 Gene

No Data Available

Interacting Proteins for GC09M127449 Gene

Gene Ontology (GO) - Biological Process for GC09M127449 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M127449 Gene

Drugs & Compounds for GC09M127449 Gene

No Compound Related Data Available

Transcripts for GC09M127449 Gene

fRNAdb Secondary structures for GC09M127449 Gene

  • FR174621
  • FR032176

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M127449 Gene

No ASD Table

Relevant External Links for GC09M127449 Gene

GeneLoc Exon Structure for
GC09M127449

No data available for mRNA/cDNA for GC09M127449 Gene

Expression for GC09M127449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M127449 Gene

Orthologs for GC09M127449 Gene

No data available for Orthologs and Evolution for GC09M127449 Gene

Paralogs for GC09M127449 Gene

No data available for Paralogs for GC09M127449 Gene

Variants for GC09M127449 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M127449 Gene

Disorders for GC09M127449 Gene

No disorders were found for GC09M127449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M127449 Gene

Publications for GC09M127449 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T. (Cell 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 1
  5. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J. … Bakin A. (J. Mol. Biol. 1997) 1

Products for GC09M127449 Gene

Sources for GC09M127449 Gene

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