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Aliases for GC09M124888 Gene

Subcategory (RNA class) for GC09M124888 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M124888 Gene

No Aliases found

ORGUL Members for GC09M124888 Gene

No data available for External Ids for GC09M124888 Gene

Summaries for GC09M124888 Gene

GeneCards Summary for GC09M124888 Gene

GC09M124888 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M124888 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

Additional gene information for GC09M124888 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M124888 Gene

Genomics for GC09M124888 Gene

Regulatory Elements for GC09M124888 Gene

Enhancers for GC09M124888 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H124866 1.3 ENCODE dbSUPER 0.4 +16.8 16834 7 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 ZNF143 ARPC5L NR6A1 ENSG00000236643 SCAI GC09M124888 RNU4-82P
GH09H124897 0.9 ENCODE 0.4 -10.3 -10336 1 TBP FOXA2 RAD21 RARA ATF7 CREM MIXL1 THAP11 CEBPB KAT8 ARPC5L RPL35 WDR38 RPSAP76 RABEPK GOLGA1 RNU4-82P GC09M124888 GC09P124941
GH09H124894 0.7 ENCODE 0.4 -7.2 -7238 0 HDGF CTCF ZNF654 SUZ12 TRIM22 CEBPB RAD21 ZKSCAN1 TEAD3 SMC3 RPL35 ARPC5L WDR38 RABEPK RPSAP76 RNU4-82P GC09M124888 GC09P124941
GH09H124881 0.6 ENCODE dbSUPER 0.4 +6.9 6931 0 PKNOX1 WDR38 OLFML2A GOLGA1 GC09M124888 RNU4-82P ARPC5L
GH09H124880 0.4 dbSUPER 0.4 +6.2 6206 0 ZNF547 ARPC5L WDR38 OLFML2A GOLGA1 PPP6C RNU4-82P GC09M124888
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M124888 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M124888 Gene

Chromosome:
9
Start:
124,887,409 bp from pter
End:
124,887,549 bp from pter
Size:
141 bases
Orientation:
Minus strand

Genomic View for GC09M124888 Gene

Genes around GC09M124888 on UCSC Golden Path with GeneCards custom track

GC09M124888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M124888 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M124888 Gene

Proteins for GC09M124888 Gene

Post-translational modifications for GC09M124888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M124888 Gene

Domains & Families for GC09M124888 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M124888 Gene

Function for GC09M124888 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M124888 Gene

Localization for GC09M124888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M124888 Gene

Pathways & Interactions for GC09M124888 Gene

SuperPathways for GC09M124888 Gene

No Data Available

Interacting Proteins for GC09M124888 Gene

Gene Ontology (GO) - Biological Process for GC09M124888 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M124888 Gene

Drugs & Compounds for GC09M124888 Gene

No Compound Related Data Available

Transcripts for GC09M124888 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M124888 Gene

No ASD Table

Relevant External Links for GC09M124888 Gene

GeneLoc Exon Structure for
GC09M124888

No data available for mRNA/cDNA for GC09M124888 Gene

Expression for GC09M124888 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M124888 Gene

Orthologs for GC09M124888 Gene

No data available for Orthologs and Evolution for GC09M124888 Gene

Paralogs for GC09M124888 Gene

No data available for Paralogs for GC09M124888 Gene

Variants for GC09M124888 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M124888 Gene

Disorders for GC09M124888 Gene

No disorders were found for GC09M124888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M124888 Gene

Publications for GC09M124888 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09M124888 Gene

Sources for GC09M124888 Gene

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