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Aliases for GC09M117708 Gene

Subcategory (RNA class) for GC09M117708 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M117708 Gene

No Aliases found

ORGUL Members for GC09M117708 Gene

No data available for External Ids for GC09M117708 Gene

Summaries for GC09M117708 Gene

GeneCards Summary for GC09M117708 Gene

GC09M117708 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M117708 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M117708 Gene

Genomics for GC09M117708 Gene

Regulatory Elements for GC09M117708 Gene

Enhancers for GC09M117708 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G117702 1 ENCODE dbSUPER 0.7 +3.7 3684 3.0 TBP CTCF TAF1 JUN MAX RAD21 YY1 GATA2 CBX5 POLR2A GC09M117708 RNU6-1082P TLR4
GH09G117717 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.8 -10766 2.1 FOXA2 ZNF384 RARA ETV6 RELB IKZF2 GATAD2A MTA2 FOXA3 NR2F1 TLR4 RNU6-1082P GC09M117708 LOC105376244
GH09G117723 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.8 -16848 2.7 MAX HNF4A FOXA1 NR2F2 TLR4 GC09M117708 RNU6-1082P LOC105376244
GH09G117720 1.2 FANTOM5 ENCODE dbSUPER 0.4 -12.5 -12486 0.9 ATF3 HLF HNF4G HNF4A REST ATF2 NR2F2 TLR4 RNU6-1082P GC09M117708 LOC105376244
GH09G117706 0.6 ENCODE dbSUPER 0.7 +1.5 1515 0.7 GATA2 GC09M117708 RNU6-1082P TLR4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M117708 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M117708 Gene

Chromosome:
9
Start:
117,707,995 bp from pter
End:
117,708,102 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC09M117708 Gene

Genes around GC09M117708 on UCSC Golden Path with GeneCards custom track

GC09M117708 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M117708 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M117708 Gene

Proteins for GC09M117708 Gene

Post-translational modifications for GC09M117708 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M117708 Gene

Domains & Families for GC09M117708 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M117708 Gene

Function for GC09M117708 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M117708 Gene

Localization for GC09M117708 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M117708 Gene

Pathways & Interactions for GC09M117708 Gene

SuperPathways for GC09M117708 Gene

No Data Available

Interacting Proteins for GC09M117708 Gene

Gene Ontology (GO) - Biological Process for GC09M117708 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M117708 Gene

Drugs & Compounds for GC09M117708 Gene

No Compound Related Data Available

Transcripts for GC09M117708 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M117708 Gene

No ASD Table

Relevant External Links for GC09M117708 Gene

GeneLoc Exon Structure for
GC09M117708

No data available for mRNA/cDNA for GC09M117708 Gene

Expression for GC09M117708 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M117708 Gene

Orthologs for GC09M117708 Gene

No data available for Orthologs and Evolution for GC09M117708 Gene

Paralogs for GC09M117708 Gene

No data available for Paralogs for GC09M117708 Gene

Variants for GC09M117708 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M117708 Gene

Disorders for GC09M117708 Gene

No disorders were found for GC09M117708 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M117708 Gene

Publications for GC09M117708 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC09M117708 Gene

Sources for GC09M117708 Gene

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