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Aliases for GC09M109197 Gene

Subcategory (RNA class) for GC09M109197 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M109197 Gene

No Aliases found

ORGUL Members for GC09M109197 Gene

No data available for External Ids for GC09M109197 Gene

Summaries for GC09M109197 Gene

GeneCards Summary for GC09M109197 Gene

GC09M109197 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M109197 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC09M109197 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M109197 Gene

Genomics for GC09M109197 Gene

Regulatory Elements for GC09M109197 Gene

Enhancers for GC09M109197 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H109192 0.6 ENCODE 0.7 +3.4 3394 0 CTCF ZNF654 MYNN ARID4B REST RAD21 GC09M109197 RNU6-984P FRRS1L
GH09H109247 1.5 Ensembl ENCODE dbSUPER 0.2 -55.6 -55601 7 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 YY1 FOS SP5 MXD4 EPB41L4B RNU6-984P MTND2P11 GC09M109197
GH09H109183 0.7 ENCODE 0.4 +12.6 12574 0 DRAP1 CTCF TFAP4 ARID4B ZNF644 DNMT3B RAD21 TEAD3 SMC3 THAP11 FRRS1L EPB41L4B GC09M109197 RNU6-984P
GH09H109184 0.7 ENCODE 0.4 +13.0 12954 0 CTCF ZNF3 ATF1 ARID4B DNMT3B RAD21 ZGPAT IKZF1 SMC3 FOS EPB41L4B CTNNAL1 RNU6-984P GC09M109197 FRRS1L
GH09H109277 1.1 ENCODE dbSUPER 0.2 -81.4 -81373 0 TFAP4 SAP130 ARID4B MAX THRB RAD21 RARA TEAD3 POLR2A HNF4G EPB41L4B MTND2P11 GC09M109197 RNU6-984P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M109197 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M109197 Gene

Chromosome:
9
Start:
109,196,200 bp from pter
End:
109,196,309 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for GC09M109197 Gene

Genes around GC09M109197 on UCSC Golden Path with GeneCards custom track

GC09M109197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M109197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M109197 Gene

Proteins for GC09M109197 Gene

Post-translational modifications for GC09M109197 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M109197 Gene

Domains & Families for GC09M109197 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M109197 Gene

Function for GC09M109197 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M109197 Gene

Localization for GC09M109197 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M109197 Gene

Pathways & Interactions for GC09M109197 Gene

SuperPathways for GC09M109197 Gene

No Data Available

Interacting Proteins for GC09M109197 Gene

Gene Ontology (GO) - Biological Process for GC09M109197 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M109197 Gene

Drugs & Compounds for GC09M109197 Gene

No Compound Related Data Available

Transcripts for GC09M109197 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M109197 Gene

No ASD Table

Relevant External Links for GC09M109197 Gene

GeneLoc Exon Structure for
GC09M109197

No data available for mRNA/cDNA for GC09M109197 Gene

Expression for GC09M109197 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M109197 Gene

Orthologs for GC09M109197 Gene

No data available for Orthologs and Evolution for GC09M109197 Gene

Paralogs for GC09M109197 Gene

No data available for Paralogs for GC09M109197 Gene

Variants for GC09M109197 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M109197 Gene

Disorders for GC09M109197 Gene

No disorders were found for GC09M109197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M109197 Gene

Publications for GC09M109197 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09M109197 Gene

Sources for GC09M109197 Gene

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