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Aliases for GC09M099146 Gene

Subcategory (RNA class) for GC09M099146 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC09M099146 Gene

No Aliases found

ORGUL Members for GC09M099146 Gene

No data available for External Ids for GC09M099146 Gene

Summaries for GC09M099146 Gene

GeneCards Summary for GC09M099146 Gene

GC09M099146 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC09M099146 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC09M099146 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M099146 Gene

Genomics for GC09M099146 Gene

Regulatory Elements for GC09M099146 Gene

Enhancers for GC09M099146 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H099125 1.3 Ensembl ENCODE dbSUPER 0.4 +17.9 17918 5 BACH1 BMI1 EBF1 BATF RELA FOSL1 EED ATF7 ETV6 RUNX3 GC09M099146 RNA5SP290 TGFBR1
GH09H099136 1.2 Ensembl ENCODE dbSUPER 0.4 +8.7 8705 0 HDAC1 SMARCE1 PKNOX1 TBL1XR1 CEBPB CEBPG ZEB2 CTBP1 NCOR1 IKZF1 GC09M099146 RNA5SP290 TGFBR1
GH09H099181 1.5 FANTOM5 Ensembl ENCODE 0.3 -35.8 -35787 1 TBL1XR1 BMI1 BATF ZNF143 ZNF207 ATF7 ETV6 RUNX3 CREM IKZF2 ALG2 STX17 SEC61B LOC105376174 RNA5SP290 GC09M099146
GH09H099118 1.3 Ensembl ENCODE dbSUPER 0.3 +26.2 26209 2 HDGF BATF EED ATF7 ETV6 RUNX3 IKZF2 CREM CHD2 ZNF687 LOC105376174 TGFBR1 GC09M099146 RNA5SP290
GH09H099102 1.3 ENCODE dbSUPER 0.3 +40.5 40463 5 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 GLIS2 ZNF143 ZNF207 FOS INVS TGFBR1 GALNT12 RNA5SP290 GC09M099146
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M099146 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M099146 Gene

Chromosome:
9
Start:
99,145,847 bp from pter
End:
99,145,966 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for GC09M099146 Gene

Genes around GC09M099146 on UCSC Golden Path with GeneCards custom track

GC09M099146 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M099146 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M099146 Gene

Proteins for GC09M099146 Gene

Post-translational modifications for GC09M099146 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M099146 Gene

Domains & Families for GC09M099146 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M099146 Gene

Function for GC09M099146 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M099146 Gene

Localization for GC09M099146 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M099146 Gene

Pathways & Interactions for GC09M099146 Gene

SuperPathways for GC09M099146 Gene

No Data Available

Interacting Proteins for GC09M099146 Gene

Gene Ontology (GO) - Biological Process for GC09M099146 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M099146 Gene

Drugs & Compounds for GC09M099146 Gene

No Compound Related Data Available

Transcripts for GC09M099146 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M099146 Gene

No ASD Table

Relevant External Links for GC09M099146 Gene

GeneLoc Exon Structure for
GC09M099146

No data available for mRNA/cDNA for GC09M099146 Gene

Expression for GC09M099146 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M099146 Gene

Orthologs for GC09M099146 Gene

No data available for Orthologs and Evolution for GC09M099146 Gene

Paralogs for GC09M099146 Gene

No data available for Paralogs for GC09M099146 Gene

Variants for GC09M099146 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M099146 Gene

Disorders for GC09M099146 Gene

No disorders were found for GC09M099146 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M099146 Gene

Publications for GC09M099146 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC09M099146 Gene

Sources for GC09M099146 Gene

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