Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC09M099146 Gene

Subcategory (RNA class) for GC09M099146 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC09M099146 Gene

No Aliases found

ORGUL Members for GC09M099146 Gene

No data available for External Ids for GC09M099146 Gene

Summaries for GC09M099146 Gene

GeneCards Summary for GC09M099146 Gene

GC09M099146 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC09M099146 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M099146 Gene

Genomics for GC09M099146 Gene

Regulatory Elements for GC09M099146 Gene

Enhancers for GC09M099146 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G099125 1.3 Ensembl ENCODE dbSUPER 0.4 +17.9 17918 5.2 BMI1 RELB ETV6 IKZF2 CREM CBFB JUNB GATAD2B TBX21 SP1 GC09M099146 RNA5SP290 TGFBR1
GH09G099136 1.2 Ensembl ENCODE dbSUPER 0.4 +8.7 8705 0.9 HDAC1 PKNOX1 TBL1XR1 CEBPG NCOR1 ETV6 SMARCE1 CEBPB ZEB2 ARID1B GC09M099146 RNA5SP290 TGFBR1
GH09G099181 1.5 FANTOM5 Ensembl ENCODE 0.3 -35.8 -35787 1.1 TBL1XR1 BMI1 ZNF143 ZNF207 RELB ETV6 IKZF2 CREM CEBPZ CBFB ALG2 STX17 SEC61B LOC105376174 GC09M099146 RNA5SP290
GH09G099150 0.6 ENCODE dbSUPER 0.7 -4.7 -4663 1.1 FOXP2 RNA5SP290 GC09M099146 LOC105376174
GH09G099118 1.3 Ensembl ENCODE dbSUPER 0.3 +26.2 26209 2.3 HDGF TBP ZNF316 EED ETV6 RELB IKZF2 CREM CHD2 MTA2 LOC105376174 TGFBR1 GC09M099146 RNA5SP290
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M099146 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M099146 Gene

Chromosome:
9
Start:
99,145,847 bp from pter
End:
99,145,966 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for GC09M099146 Gene

Genes around GC09M099146 on UCSC Golden Path with GeneCards custom track

GC09M099146 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M099146 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M099146 Gene

Proteins for GC09M099146 Gene

Post-translational modifications for GC09M099146 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M099146 Gene

Domains & Families for GC09M099146 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M099146 Gene

Function for GC09M099146 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M099146 Gene

Localization for GC09M099146 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M099146 Gene

Pathways & Interactions for GC09M099146 Gene

SuperPathways for GC09M099146 Gene

No Data Available

Interacting Proteins for GC09M099146 Gene

Gene Ontology (GO) - Biological Process for GC09M099146 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M099146 Gene

Drugs & Compounds for GC09M099146 Gene

No Compound Related Data Available

Transcripts for GC09M099146 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M099146 Gene

No ASD Table

Relevant External Links for GC09M099146 Gene

GeneLoc Exon Structure for
GC09M099146

No data available for mRNA/cDNA for GC09M099146 Gene

Expression for GC09M099146 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M099146 Gene

Orthologs for GC09M099146 Gene

No data available for Orthologs and Evolution for GC09M099146 Gene

Paralogs for GC09M099146 Gene

No data available for Paralogs for GC09M099146 Gene

Variants for GC09M099146 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M099146 Gene

Disorders for GC09M099146 Gene

No disorders were found for GC09M099146 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M099146 Gene

Publications for GC09M099146 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC09M099146 Gene

Sources for GC09M099146 Gene

Content
Loading form....