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Aliases for GC09M086423 Gene

Subcategory (RNA class) for GC09M086423 Gene


Quality Score for this RNA gene is


Aliases for GC09M086423 Gene

No Aliases found

ORGUL Members for GC09M086423 Gene

No data available for External Ids for GC09M086423 Gene

Summaries for GC09M086423 Gene

GeneCards Summary for GC09M086423 Gene

GC09M086423 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M086423 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC09M086423 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M086423 Gene

Genomics for GC09M086423 Gene

Regulatory Elements for GC09M086423 Gene

Enhancers for GC09M086423 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H086433 1 Ensembl ENCODE 0.4 -11.4 -11392 1 CTCF RAD21 ZFHX2 ZNF366 SCRT2 SMC3 ZNF143 FOS EGR2 TCF7L2 GC09M086423 RNU2-36P LOC105376123
GH09H086494 1.1 Ensembl ENCODE 0.2 -71.9 -71866 0 TBP ZSCAN4 FEZF1 RAD21 BRCA1 ZEB1 RFX5 SCRT2 RCOR1 DEK RNU2-36P GC09M086423 LOC105376123
GH09H086500 0.9 Ensembl ENCODE 0.2 -77.9 -77932 1 SCRT1 JUN CEBPB EP300 RFX5 JUND ZNF316 MAFF POLR2A STAT3 GC09M086423 RNU2-36P LOC105376123
GH09H086486 0.9 Ensembl ENCODE 0.2 -64.1 -64050 1 CTCF ZNF654 ZFP37 REST RAD21 RFX5 ZNF143 SMC3 FOXP2 GC09M086423 RNU2-36P LOC105376123
GH09H086463 0.5 ENCODE 0.3 -41.5 -41473 1 SMARCE1 CEBPB ELF1 ZIC2 RNU2-36P GC09M086423 LOC105376123
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M086423 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M086423 Gene

86,422,937 bp from pter
86,423,128 bp from pter
192 bases
Minus strand

Genomic View for GC09M086423 Gene

Genes around GC09M086423 on UCSC Golden Path with GeneCards custom track

GC09M086423 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M086423 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M086423 Gene

Proteins for GC09M086423 Gene

Post-translational modifications for GC09M086423 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M086423 Gene

Domains & Families for GC09M086423 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M086423 Gene

Function for GC09M086423 Gene

Phenotypes From GWAS Catalog for GC09M086423 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M086423 Gene

Localization for GC09M086423 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M086423 Gene

Pathways & Interactions for GC09M086423 Gene

SuperPathways for GC09M086423 Gene

No Data Available

Interacting Proteins for GC09M086423 Gene

Gene Ontology (GO) - Biological Process for GC09M086423 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC09M086423 Gene

Drugs & Compounds for GC09M086423 Gene

No Compound Related Data Available

Transcripts for GC09M086423 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M086423 Gene

No ASD Table

Relevant External Links for GC09M086423 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC09M086423 Gene

Expression for GC09M086423 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M086423 Gene

Orthologs for GC09M086423 Gene

No data available for Orthologs and Evolution for GC09M086423 Gene

Paralogs for GC09M086423 Gene

No data available for Paralogs for GC09M086423 Gene

Variants for GC09M086423 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M086423 Gene

Disorders for GC09M086423 Gene

No disorders were found for GC09M086423 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M086423 Gene

Publications for GC09M086423 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC09M086423 Gene

Sources for GC09M086423 Gene

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